Factsheet for PGSC0003DMT400064380

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049598	Potato	plastid	60.15	83.07
VIT_19s0014g04970.t01	Wine grape	plastid	52.87	72.25
KRH22214	Soybean	nucleus, plastid	52.87	71.13
KRH27125	Soybean	plastid	51.34	69.07
GSMUA_Achr8P33170_001	Banana	plastid	49.43	67.89
CDY18341	Canola	plastid	48.28	64.29
Bra029017.1-P	Field mustard	cytosol	31.42	64.06
CDY43032	Canola	cytosol	31.42	64.06
Bra002973.1-P	Field mustard	plastid	47.89	62.81
CDY42463	Canola	plastid	47.89	62.81
AT5G54600.1	Thale cress	plastid	47.51	62.63
CDY06636	Canola	plastid	46.36	60.8
Bra022734.1-P	Field mustard	plastid	45.59	59.2
CDY28762	Canola	plastid	45.59	59.2
Os06t0683200-01	Rice	plastid	42.53	58.42
EER90241	Sorghum	plastid	41.0	56.32
TraesCS7D01G439900.1	Wheat	plastid	39.46	53.93
TraesCS7B01G350400.1	Wheat	plastid	39.46	53.93
TraesCS7A01G450600.1	Wheat	golgi, plastid	39.46	53.93
HORVU2Hr1G022000.2	Barley	cytosol	29.5	52.38
Zm00001d014488_P001	Maize	plastid	41.38	52.17
HORVU7Hr1G101810.4	Barley	plastid	34.1	51.74
CDY43816	Canola	nucleus	26.82	40.7
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	18.39	37.5
PGSC0003DMT400046331	Potato	cytosol	14.94	24.68
PGSC0003DMT400079319	Potato	mitochondrion	14.56	23.9

Protein Annotations

EntrezGene:102582481	MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722
InterPro:KOW	UniProt:M1CC95	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	EnsemblPlantsGene:PGSC0003DMG400025013
PGSC:PGSC0003DMG400025013	EnsemblPlants:PGSC0003DMT400064380	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002954D81	SEG:seg

Description

50S ribosomal protein L24, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400025013]

Coordinates

chr10:-:1542691..1545713

Molecular Weight (calculated)

28837.4 Da

IEP (calculated)

10.613

GRAVY (calculated)

-0.300

Length

261 amino acids

Sequence
(BLAST)

001: MVAMAALQSS FTSLSISSNS FLGQPFSPLP LCSPLKENDP NGGGSITKRC NILQLSGLPP EIQKIAGRYL NRTGCVILIV GNKQLLLSPY AILRSFQVML
101: NLQVKSTQTP GSIVAKLKRW ERKKCKPNSL PVLHKMHVKL GDTVKVISGH DKDKVGEITE IIKHNSKVVI REINLKTKHV KSRSEDEPGQ IVKIEAPIHS
201: SNVMLYSKDQ KVASRVGHKT LDNGKRVRYL IKTGEIIDSA ENWKKAVKER EKTTEAVAVA S

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.