Factsheet for VIT_19s0014g04970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063960.2.1	Tomato	nucleus	73.3	74.07
KRH22214	Soybean	nucleus, plastid	74.87	73.71
GSMUA_Achr8P33170_001	Banana	plastid	72.77	73.16
PGSC0003DMT400049598	Potato	plastid	71.73	72.49
KRH27125	Soybean	plastid	71.73	70.62
Bra029017.1-P	Field mustard	cytosol	43.46	64.84
CDY43032	Canola	cytosol	43.46	64.84
CDY18341	Canola	plastid	65.44	63.78
Bra002973.1-P	Field mustard	plastid	65.97	63.32
CDY42463	Canola	plastid	65.97	63.32
AT5G54600.1	Thale cress	plastid	65.44	63.13
CDY06636	Canola	plastid	64.4	61.81
Os06t0683200-01	Rice	plastid	61.26	61.58
Bra022734.1-P	Field mustard	plastid	63.87	60.7
CDY28762	Canola	plastid	63.87	60.7
EER90241	Sorghum	plastid	58.64	58.95
HORVU2Hr1G022000.2	Barley	cytosol	45.03	58.5
TraesCS7B01G350400.1	Wheat	plastid	58.12	58.12
TraesCS7D01G439900.1	Wheat	plastid	58.12	58.12
TraesCS7A01G450600.1	Wheat	golgi, plastid	58.12	58.12
HORVU7Hr1G101810.4	Barley	plastid	49.74	55.23
Zm00001d014488_P001	Maize	plastid	58.64	54.11
PGSC0003DMT400064380	Potato	plastid	72.25	52.87
CDY43816	Canola	nucleus	35.08	38.95
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.13	37.5
VIT_07s0151g00660.t01	Wine grape	cytosol	23.56	22.5

Protein Annotations

EntrezGene:100250357	wikigene:100250357	MapMan:17.7.2.1.22	Gene3D:2.30.30.30	UniProt:A5B7W2	EMBL:AM449795
ProteinID:CAN78749	ProteinID:CAN78749.1	ProteinID:CCB46468	ProteinID:CCB46468.1	EMBL:FN595229	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0030529	GO:GO:0032544	InterPro:IPR014722	InterPro:KOW	EntrezGene:LOC100250357	wikigene:LOC100250357
HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGR:TC52737
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001524210	ArrayExpress:VIT_19s0014g04970	EnsemblPlantsGene:VIT_19s0014g04970	EnsemblPlants:VIT_19s0014g04970.t01
unigene:Vvi.16549	RefSeq:XP_002282889	RefSeq:XP_002282889.1	RefSeq:XP_003634697	RefSeq:XP_003634697.1	RefSeq:XP_003634698
RefSeq:XP_003634698.1	RefSeq:XP_010644320.1	RefSeq:XP_019073045.1	RefSeq:XP_019073046.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:5311373..5314761

Molecular Weight (calculated)

21290.0 Da

IEP (calculated)

10.533

GRAVY (calculated)

-0.429

Length

191 amino acids

Sequence
(BLAST)

001: MAAMAALQSS FTSLSLSSNS FLGQPFSPLL YPSLAKSTEK PCPIVMRLKR WERKECKPNS LPVLHKMHVK VGDTVKIISG REKGRTGEIS KIFRHNSTVV
101: VKDINLKTKH VKGRGEDEPG QIIKIEAPIH SSNVMLYSKE QNVASRVGHK ILENGKRVRY LIKTGEIIDS AENWERVVKD KEKTEVAAAA S

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.