Factsheet for GSMUA_Achr8P33170_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g04970.t01	Wine grape	plastid	73.16	72.77
Solyc07g063960.2.1	Tomato	nucleus	68.95	69.31
PGSC0003DMT400049598	Potato	plastid	68.95	69.31
KRH22214	Soybean	nucleus, plastid	70.53	69.07
KRH27125	Soybean	plastid	70.0	68.56
Os06t0683200-01	Rice	plastid	65.79	65.79
Bra029017.1-P	Field mustard	cytosol	43.68	64.84
CDY43032	Canola	cytosol	43.68	64.84
CDY18341	Canola	plastid	66.84	64.8
AT5G54600.1	Thale cress	plastid	67.37	64.65
Bra002973.1-P	Field mustard	plastid	67.37	64.32
CDY42463	Canola	plastid	67.37	64.32
EER90241	Sorghum	plastid	64.21	64.21
CDY06636	Canola	plastid	65.79	62.81
TraesCS7D01G439900.1	Wheat	plastid	62.63	62.3
TraesCS7B01G350400.1	Wheat	plastid	62.63	62.3
TraesCS7A01G450600.1	Wheat	golgi, plastid	62.63	62.3
CDY28762	Canola	plastid	65.26	61.69
Bra022734.1-P	Field mustard	plastid	65.26	61.69
HORVU7Hr1G101810.4	Barley	plastid	54.74	60.47
Zm00001d014488_P001	Maize	plastid	64.74	59.42
HORVU2Hr1G022000.2	Barley	cytosol	45.26	58.5
PGSC0003DMT400064380	Potato	plastid	67.89	49.43
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	30.0	44.53
CDY43816	Canola	nucleus	36.84	40.7
GSMUA_AchrUn_...	Banana	cytosol	24.21	28.93
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	16.32	22.63

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G33170_001	EnsemblPlants:GSMUA_Achr8P33170_001
EnsemblPlants:GSMUA_Achr8T33170_001	InterPro:IPR014722	InterPro:KOW	UniProt:M0TVR9	HAMAP:MF_01326_B	PFAM:PF00467
PFAM:PF17136	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	SMART:SM00739
SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002955745	SEG:seg	:

Description

50S ribosomal protein L24, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G33170_001]

Coordinates

chr8:+:34284267..34287068

Molecular Weight (calculated)

21408.3 Da

IEP (calculated)

10.634

GRAVY (calculated)

-0.486

Length

190 amino acids

Sequence
(BLAST)

001: MATMVALQSS MASLSISSNS FLGQRLSPPL LTTPVKSVDQ PCTIVMRLKR WERKECKPNS LPILHKMHVK VGDTVKLITG HENGKIGEIT RIFRHNSTVI
101: VKGLNLKTKH MKSREQGEPG QIVKIEAPIH SSNVMLYSKE KEVASRVGHK ILEDGTRVRY LIKTGEIIDS TENWKKVVKE RKEKKEEASS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.