Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G127400.1 | Wheat | cytosol | 35.04 | 30.19 |
| TraesCS4B01G132600.1 | Wheat | cytosol | 35.04 | 30.19 |
| Os12t0135900-00 | Rice | cytosol | 35.04 | 30.19 |
| Os11t0139100-01 | Rice | cytosol | 35.04 | 30.19 |
| HORVU4Hr1G026060.1 | Barley | cytosol | 35.04 | 30.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.04 | 30.19 |
| Zm00001d052452_P001 | Maize | mitochondrion | 34.31 | 29.56 |
| TraesCS4A01G186300.1 | Wheat | cytosol | 34.31 | 29.56 |
| EES09222 | Sorghum | cytosol | 34.31 | 29.56 |
| EES16542 | Sorghum | cytosol | 34.31 | 29.56 |
| KRH05093 | Soybean | cytosol | 32.85 | 28.3 |
| KRG99034 | Soybean | cytosol | 27.74 | 27.54 |
| KRH49799 | Soybean | cytosol | 31.39 | 27.04 |
| AT5G23535.1 | Thale cress | cytosol | 30.66 | 26.42 |
| CDY16856 | Canola | cytosol | 30.66 | 26.42 |
| CDX88034 | Canola | cytosol | 30.66 | 26.42 |
| CDX87168 | Canola | cytosol | 30.66 | 26.42 |
| CDX80371 | Canola | cytosol | 30.66 | 26.42 |
| Bra026493.1-P | Field mustard | cytosol | 30.66 | 26.42 |
| Bra009692.1-P | Field mustard | cytosol | 30.66 | 26.42 |
| PGSC0003DMT400079319 | Potato | mitochondrion | 28.47 | 24.53 |
| Solyc08g075850.2.1 | Tomato | mitochondrion | 28.47 | 24.53 |
| PGSC0003DMT400046331 | Potato | cytosol | 27.74 | 24.05 |
| VIT_07s0151g00660.t01 | Wine grape | cytosol | 30.66 | 21.0 |
| KRH71399 | Soybean | mitochondrion | 30.66 | 18.75 |
| GSMUA_Achr8P33170_001 | Banana | plastid | 22.63 | 16.32 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr6G25160_001 | EnsemblPlants:GSMUA_Achr6P25160_001 |
| EnsemblPlants:GSMUA_Achr6T25160_001 | InterPro:IPR014722 | UniProt:M0TA12 | PFAM:PF17136 | PANTHER:PTHR12903 | PANTHER:PTHR12903:SF6 |
| InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24 | UniParc:UPI0002955C68 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G25160_001]
Coordinates
chr6:-:26212772..26217452
Molecular Weight (calculated)
15411.5 Da
IEP (calculated)
10.600
GRAVY (calculated)
-0.436
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNVINVITG VTILRIDDAA PIEDASLLPH RHRRCHVRLR SVSRDTTQLQ PWEERRESRN RKILGGETVA KNHHQSQSGG IFSIEAPPHV SNVQVAQSLD
101: TIRRLCRIVY KYLEDGTKVT VSTGLAASGA RIPHLRY
101: TIRRLCRIVY KYLEDGTKVT VSTGLAASGA RIPHLRY
001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL
Arabidopsis Description
50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.