Factsheet for Zm00001d052452_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09222	Sorghum	cytosol	94.97	94.97
Os11t0139100-01	Rice	cytosol	93.71	93.71
Os12t0135900-00	Rice	cytosol	93.08	93.08
HORVU4Hr1G026060.1	Barley	cytosol	91.19	91.19
TraesCS4D01G127400.1	Wheat	cytosol	89.94	89.94
TraesCS4B01G132600.1	Wheat	cytosol	89.94	89.94
TraesCS4A01G186300.1	Wheat	cytosol	89.31	89.31
GSMUA_AchrUn_...	Banana	cytosol	83.65	83.65
KRH05093	Soybean	cytosol	80.5	80.5
Bra009692.1-P	Field mustard	cytosol	79.87	79.87
KRH49799	Soybean	cytosol	79.87	79.87
CDY16856	Canola	cytosol	79.87	79.87
CDX88034	Canola	cytosol	79.87	79.87
CDX87168	Canola	cytosol	79.87	79.87
CDX80371	Canola	cytosol	79.87	79.87
Bra026493.1-P	Field mustard	cytosol	79.87	79.87
AT5G23535.1	Thale cress	cytosol	79.87	79.87
PGSC0003DMT400079319	Potato	mitochondrion	75.47	75.47
Solyc08g075850.2.1	Tomato	mitochondrion	75.47	75.47
PGSC0003DMT400046331	Potato	cytosol	74.21	74.68
KRG99034	Soybean	cytosol	59.12	68.12
VIT_07s0151g00660.t01	Wine grape	cytosol	77.36	61.5
KRH71399	Soybean	mitochondrion	76.73	54.46
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	29.56	34.31
Zm00001d014488_P001	Maize	plastid	27.67	21.26

Protein Annotations

EntrezGene:100274273	MapMan:17.7.1.1.22	Gene3D:2.30.30.30	ProteinID:AQK57267.1	UniProt:B4FZW6	EMBL:BT042654
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI00017B7586	EnsemblPlantsGene:Zm00001d052452	EnsemblPlants:Zm00001d052452_P001	EnsemblPlants:Zm00001d052452_T001	:	:

Description

KOW domain-containing protein

Coordinates

chr4:-:190313659..190322111

Molecular Weight (calculated)

17733.8 Da

IEP (calculated)

10.578

GRAVY (calculated)

-0.584

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKVLRGDN VMIIRGKDKG ESGLIKRVIR SQNRVIVEGK NLVKKHIKQG EGHTGGIFSV EAPLHVSNVQ VVDPVTGKPC KIGYKYLEDG
101: TKVRYARGMY ASGVVIPRPE ILKERRKPRP TSPGPKDTPI ELAQEKTYDE KAGIGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.