Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009692.1-P | Field mustard | cytosol | 99.37 | 99.37 |
| Bra026493.1-P | Field mustard | cytosol | 99.37 | 99.37 |
| CDX80371 | Canola | cytosol | 99.37 | 99.37 |
| CDX87168 | Canola | cytosol | 99.37 | 99.37 |
| CDX88034 | Canola | cytosol | 99.37 | 99.37 |
| CDY16856 | Canola | cytosol | 99.37 | 99.37 |
| KRH05093 | Soybean | cytosol | 84.91 | 84.91 |
| KRH49799 | Soybean | cytosol | 84.28 | 84.28 |
| Solyc08g075850.2.1 | Tomato | mitochondrion | 81.76 | 81.76 |
| PGSC0003DMT400079319 | Potato | mitochondrion | 81.76 | 81.76 |
| EES09222 | Sorghum | cytosol | 81.13 | 81.13 |
| PGSC0003DMT400046331 | Potato | cytosol | 80.5 | 81.01 |
| HORVU4Hr1G026060.1 | Barley | cytosol | 80.5 | 80.5 |
| Os11t0139100-01 | Rice | cytosol | 80.5 | 80.5 |
| Zm00001d052452_P001 | Maize | mitochondrion | 79.87 | 79.87 |
| Os12t0135900-00 | Rice | cytosol | 79.87 | 79.87 |
| EES16542 | Sorghum | cytosol | 79.87 | 79.87 |
| TraesCS4A01G186300.1 | Wheat | cytosol | 78.62 | 78.62 |
| TraesCS4B01G132600.1 | Wheat | cytosol | 78.62 | 78.62 |
| TraesCS4D01G127400.1 | Wheat | cytosol | 78.62 | 78.62 |
| KRG99034 | Soybean | cytosol | 66.67 | 76.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 76.73 | 76.73 |
| VIT_07s0151g00660.t01 | Wine grape | cytosol | 81.76 | 65.0 |
| KRH71399 | Soybean | mitochondrion | 84.28 | 59.82 |
| GSMUA_Achr6P25160_001 | Banana | cytosol, plastid | 26.42 | 30.66 |
| AT5G54600.1 | Thale cress | plastid | 25.79 | 20.71 |
Protein Annotations
| MapMan:17.7.1.1.22 | Gene3D:2.30.30.30 | EntrezGene:832419 | UniProt:A0A178UCR9 | ProteinID:AED93180.1 | EMBL:AK227904 |
| ProteinID:ANM70056.1 | ArrayExpress:AT5G23535 | EnsemblPlantsGene:AT5G23535 | RefSeq:AT5G23535 | TAIR:AT5G23535 | RefSeq:AT5G23535-TAIR-G |
| EnsemblPlants:AT5G23535.1 | TAIR:AT5G23535.1 | ProteinID:BAA97247.1 | EMBL:BT011601 | EMBL:BT012239 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR014722 | InterPro:KOW | HAMAP:MF_01326_B | RefSeq:NP_001331693.1 |
| RefSeq:NP_680212.1 | ProteinID:OAO91024.1 | PFAM:PF00467 | PFAM:PF17136 | PO:PO:0000293 | ScanProsite:PS01108 |
| PANTHER:PTHR12903 | PANTHER:PTHR12903:SF6 | UniProt:Q9LT09 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24 | InterPro:Ribosomal_L24/26_CS |
| SMART:SM00739 | SUPFAM:SSF50104 | TIGRFAMs:TIGR01079 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00000A0639 | : |
Description
50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
Coordinates
chr5:+:7935316..7937405
Molecular Weight (calculated)
17499.4 Da
IEP (calculated)
10.764
GRAVY (calculated)
-0.512
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.