Factsheet for VIT_07s0151g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05093	Soybean	cytosol	70.0	88.05
KRH49799	Soybean	cytosol	68.5	86.16
Solyc08g075850.2.1	Tomato	mitochondrion	67.0	84.28
PGSC0003DMT400079319	Potato	mitochondrion	67.0	84.28
PGSC0003DMT400046331	Potato	cytosol	65.5	82.91
Bra009692.1-P	Field mustard	cytosol	65.5	82.39
CDY16856	Canola	cytosol	65.5	82.39
Bra026493.1-P	Field mustard	cytosol	65.5	82.39
CDX80371	Canola	cytosol	65.5	82.39
CDX88034	Canola	cytosol	65.5	82.39
CDX87168	Canola	cytosol	65.5	82.39
AT5G23535.1	Thale cress	cytosol	65.0	81.76
GSMUA_AchrUn_...	Banana	cytosol	64.5	81.13
HORVU4Hr1G026060.1	Barley	cytosol	63.0	79.25
Os11t0139100-01	Rice	cytosol	63.0	79.25
Os12t0135900-00	Rice	cytosol	62.5	78.62
EES09222	Sorghum	cytosol	62.0	77.99
TraesCS4A01G186300.1	Wheat	cytosol	61.5	77.36
TraesCS4B01G132600.1	Wheat	cytosol	61.5	77.36
TraesCS4D01G127400.1	Wheat	cytosol	61.5	77.36
Zm00001d052452_P001	Maize	mitochondrion	61.5	77.36
EES16542	Sorghum	cytosol	61.0	76.73
KRG99034	Soybean	cytosol	49.0	71.01
KRH71399	Soybean	mitochondrion	68.5	61.16
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	21.0	30.66
VIT_19s0014g04970.t01	Wine grape	plastid	22.5	23.56

Protein Annotations

EntrezGene:100852679	wikigene:100852679	MapMan:17.7.1.1.22	Gene3D:2.30.30.30	ProteinID:CCB51901	ProteinID:CCB51901.1
UniProt:F6HI55	EMBL:FN595764	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722
InterPro:KOW	EntrezGene:LOC100852679	wikigene:LOC100852679	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136
ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002107F84	ArrayExpress:VIT_07s0151g00660
EnsemblPlantsGene:VIT_07s0151g00660	EnsemblPlants:VIT_07s0151g00660.t01	RefSeq:XP_003632319	RefSeq:XP_003632319.1	:	:

Description

No Description!

Coordinates

chr7:-:1029769..1033097

Molecular Weight (calculated)

22111.2 Da

IEP (calculated)

10.700

GRAVY (calculated)

-0.319

Length

200 amino acids

Sequence
(BLAST)

001: MIWEVALACL KCYQTENDVI SFFILVSAGR LANTHRERPV EMGWKAAQKL IQNWKIVRGD NVMIIRGKDK GETGVIKRVI RSQNRVIVEG KNLVKKHIKQ
101: GQGHEGGIFS VEAPLHASNV QILDPATQKP VKIGIRYLED GTKVRVSRGQ GASGSIIPRP EILKIRTTPR PTVAGPKDTP MDLVLEKTYD AKTGKGMPGL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.