CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05093	Soybean	cytosol	63.84	89.94
KRH49799	Soybean	cytosol	63.39	89.31
Bra009692.1-P	Field mustard	cytosol	60.27	84.91
CDY16856	Canola	cytosol	60.27	84.91
CDX88034	Canola	cytosol	60.27	84.91
CDX80371	Canola	cytosol	60.27	84.91
CDX87168	Canola	cytosol	60.27	84.91
Bra026493.1-P	Field mustard	cytosol	60.27	84.91
AT5G23535.1	Thale cress	cytosol	59.82	84.28
KRG99034	Soybean	cytosol	50.89	82.61
Solyc08g075850.2.1	Tomato	mitochondrion	56.7	79.87
PGSC0003DMT400079319	Potato	mitochondrion	56.7	79.87
PGSC0003DMT400046331	Potato	cytosol	56.25	79.75
GSMUA_AchrUn_...	Banana	cytosol	56.25	79.25
HORVU4Hr1G026060.1	Barley	cytosol	56.25	79.25
EES09222	Sorghum	cytosol	55.8	78.62
Os11t0139100-01	Rice	cytosol	55.8	78.62
Os12t0135900-00	Rice	cytosol	55.36	77.99
EES16542	Sorghum	cytosol	54.91	77.36
TraesCS4A01G186300.1	Wheat	cytosol	54.91	77.36
TraesCS4B01G132600.1	Wheat	cytosol	54.91	77.36
TraesCS4D01G127400.1	Wheat	cytosol	54.91	77.36
Zm00001d052452_P001	Maize	mitochondrion	54.46	76.73
VIT_07s0151g00660.t01	Wine grape	cytosol	61.16	68.5
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	18.75	30.66
KRH27125	Soybean	plastid	20.09	23.2
KRH22214	Soybean	nucleus, plastid	19.64	22.68

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	UniProt:A0A0R0KWZ9	EMBL:ACUP02000897	EnsemblPlantsGene:GLYMA_02G145800	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	EnsemblPlants:KRH71399	ProteinID:KRH71399	ProteinID:KRH71399.1
HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0006EE0526

Description

hypothetical protein

Coordinates

chr2:-:15058199..15062182

Molecular Weight (calculated)

24782.0 Da

IEP (calculated)

10.937

GRAVY (calculated)

-0.294

Length

224 amino acids

Sequence
(BLAST)

001: MKCLQCAKAQ LYLDQMTKLL RLLPFLLEAH KCKKAVFTPG LKVPWLLHTH SVPPSRYTKS AGTSCMGWKA AEKLIRHWKI LRGDNVMITR GKDKGETGII
101: KRVIRSQNRV IVESKNLVKK HIKQGQGHEG GIFTVEAPLH ASNVQVLDPV TGKPCKVGVK YLEDGTKVRV SRGIGTSGSI VPRPEILKIR TTPRPAVLGP
201: KNTPMNLVLE KTCNAKTGRG MPEL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.