CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27125	Soybean	plastid	92.27	92.27
VIT_19s0014g04970.t01	Wine grape	plastid	73.71	74.87
GSMUA_Achr8P33170_001	Banana	plastid	69.07	70.53
Solyc07g063960.2.1	Tomato	nucleus	68.56	70.37
PGSC0003DMT400049598	Potato	plastid	68.04	69.84
Bra029017.1-P	Field mustard	cytosol	45.36	68.75
CDY43032	Canola	cytosol	45.36	68.75
CDY18341	Canola	plastid	65.98	65.31
AT5G54600.1	Thale cress	plastid	65.98	64.65
Bra002973.1-P	Field mustard	plastid	65.98	64.32
CDY42463	Canola	plastid	65.98	64.32
Os06t0683200-01	Rice	plastid	62.89	64.21
CDY06636	Canola	plastid	64.95	63.32
EER90241	Sorghum	plastid	60.82	62.11
CDY28762	Canola	plastid	63.4	61.19
Bra022734.1-P	Field mustard	plastid	63.4	61.19
HORVU2Hr1G022000.2	Barley	cytosol	45.36	59.86
TraesCS7D01G439900.1	Wheat	plastid	58.76	59.69
TraesCS7B01G350400.1	Wheat	plastid	58.76	59.69
TraesCS7A01G450600.1	Wheat	golgi, plastid	58.76	59.69
Zm00001d014488_P001	Maize	plastid	60.82	57.0
HORVU7Hr1G101810.4	Barley	plastid	49.48	55.81
PGSC0003DMT400064380	Potato	plastid	71.13	52.87
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	26.8	40.62
CDY43816	Canola	nucleus	35.57	40.12
KRH49799	Soybean	cytosol	21.65	26.42
KRH05093	Soybean	cytosol	21.13	25.79
KRG99034	Soybean	cytosol	18.04	25.36
KRH71399	Soybean	mitochondrion	22.68	19.64

Protein Annotations

EntrezGene:100306643	MapMan:17.7.2.1.22	Gene3D:2.30.30.30	EMBL:ACUP02008393	EMBL:BT090855	UniProt:C6T0A2
EnsemblPlantsGene:GLYMA_13G285600	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW
EnsemblPlants:KRH22214	ProteinID:KRH22214	ProteinID:KRH22214.1	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136
ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00018C69A8	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:38651123..38654218

Molecular Weight (calculated)

21476.4 Da

IEP (calculated)

10.648

GRAVY (calculated)

-0.426

Length

194 amino acids

Sequence
(BLAST)

001: MAAMAALQSS MVGLSLSSNS FLGQRLSPIT LPSLLPGKST EKQCPIVMRL KRWERKECKP NSLPILHKMH VKLGDTVQVI SGRERGKVGE ITKIFKHNST
101: VIVKDLNLKT KHVKSREEGE PGQIIKIEGP IHSSNVMLYS KDQKVASRVG HKVLDNGKKV RYLIKTGEII DSAENWKKLK EATKQTEEAT AAAA

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.