CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014488_P001	Maize	plastid	96.84	88.89
Os06t0683200-01	Rice	plastid	88.42	88.42
TraesCS7D01G439900.1	Wheat	plastid	81.58	81.15
TraesCS7B01G350400.1	Wheat	plastid	81.58	81.15
TraesCS7A01G450600.1	Wheat	golgi, plastid	81.58	81.15
HORVU7Hr1G101810.4	Barley	plastid	68.95	76.16
HORVU2Hr1G022000.2	Barley	cytosol	54.74	70.75
GSMUA_Achr8P33170_001	Banana	plastid	64.21	64.21
KRH27125	Soybean	plastid	62.63	61.34
KRH22214	Soybean	nucleus, plastid	62.11	60.82
CDY18341	Canola	plastid	61.05	59.18
VIT_19s0014g04970.t01	Wine grape	plastid	58.95	58.64
CDY43032	Canola	cytosol	39.47	58.59
Bra029017.1-P	Field mustard	cytosol	39.47	58.59
PGSC0003DMT400049598	Potato	plastid	57.37	57.67
Solyc07g063960.2.1	Tomato	nucleus	57.37	57.67
AT5G54600.1	Thale cress	plastid	60.0	57.58
CDY42463	Canola	plastid	60.0	57.29
Bra002973.1-P	Field mustard	plastid	60.0	57.29
CDY06636	Canola	plastid	58.95	56.28
CDY28762	Canola	plastid	58.42	55.22
Bra022734.1-P	Field mustard	plastid	58.42	55.22
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	34.21	50.78
PGSC0003DMT400064380	Potato	plastid	56.32	41.0
CDY43816	Canola	nucleus	34.21	37.79
EES16542	Sorghum	cytosol	23.68	28.3
EES09222	Sorghum	cytosol	23.68	28.3

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	EntrezGene:8083304	UniProt:C5Z876	EnsemblPlants:EER90241	ProteinID:EER90241
ProteinID:EER90241.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0030529	GO:GO:0032544	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	EnsemblPlantsGene:SORBI_3010G233800	SUPFAM:SSF50104	unigene:Sbi.8670
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001A896B8	RefSeq:XP_002438874.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:57650497..57653749

Molecular Weight (calculated)

20963.7 Da

IEP (calculated)

10.509

GRAVY (calculated)

-0.328

Length

190 amino acids

Sequence
(BLAST)

001: MAGMAALQGA MASLSVSAPG AASTSSFWGN RLATYSAPQP GVRFMVKICP IEMKLKRWER KKCKPNSLPV LHKMHVRIGD TVQVIAGREK GKVGEVTRLF
101: KHNSTVIVKD LNLKSKHKKG TDDEPGEIVM IEGPIHSSNV MLYSKEKSVA SRVGHKFLED GTKVRYLVKT GEVIDSVEKW VKVFKEGNSE

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.