CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029017.1-P	Field mustard	cytosol	100.0	100.0
CDY18341	Canola	plastid	93.75	61.22
CDY42463	Canola	plastid	94.53	60.8
CDY06636	Canola	plastid	93.75	60.3
AT5G54600.1	Thale cress	plastid	92.19	59.6
CDY28762	Canola	plastid	88.28	56.22
Solyc07g063960.2.1	Tomato	nucleus	67.19	45.5
PGSC0003DMT400049598	Potato	plastid	67.19	45.5
KRH27125	Soybean	plastid	68.75	45.36
KRH22214	Soybean	nucleus, plastid	68.75	45.36
HORVU2Hr1G022000.2	Barley	cytosol	50.78	44.22
GSMUA_Achr8P33170_001	Banana	plastid	64.84	43.68
VIT_19s0014g04970.t01	Wine grape	plastid	64.84	43.46
HORVU7Hr1G101810.4	Barley	plastid	56.25	41.86
EER90241	Sorghum	plastid	58.59	39.47
Os06t0683200-01	Rice	plastid	57.81	38.95
TraesCS7A01G450600.1	Wheat	golgi, plastid	56.25	37.7
TraesCS7B01G350400.1	Wheat	plastid	56.25	37.7
TraesCS7D01G439900.1	Wheat	plastid	56.25	37.7
Zm00001d014488_P001	Maize	plastid	59.38	36.72
CDY43816	Canola	nucleus	46.88	34.88
PGSC0003DMT400064380	Potato	plastid	64.06	31.42
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.0	25.0
CDY16856	Canola	cytosol	30.47	24.53
CDX88034	Canola	cytosol	30.47	24.53
CDX87168	Canola	cytosol	30.47	24.53
CDX80371	Canola	cytosol	30.47	24.53

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078HYS7	UniProt:A0A078HYS7	EnsemblPlants:CDY43032	ProteinID:CDY43032
ProteinID:CDY43032.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00075859001	InterPro:IPR014722
InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903
PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000253FEF2	:	:	:

Description

BnaA03g11790DBnaA03g11790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYS7]

Coordinates

chrLK032543:-:102263..102719

Molecular Weight (calculated)

14237.3 Da

IEP (calculated)

10.279

GRAVY (calculated)

-0.464

Length

128 amino acids

Sequence
(BLAST)

001: MHVKFGDTVK VISGRDKGKI GEVTKIFTHN STIVIKDVNL KTKHMKSREE GEPGQILKIE APIHSSNVML HSKEKEVVSR VGHKVLEDGH KVRYLILTGE
101: LIDTVAKWKQ LKEAKDKETT QAAVASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.