Factsheet for Os06t0683200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90241	Sorghum	plastid	88.42	88.42
Zm00001d014488_P001	Maize	plastid	87.89	80.68
TraesCS7D01G439900.1	Wheat	plastid	80.53	80.1
TraesCS7B01G350400.1	Wheat	plastid	80.53	80.1
TraesCS7A01G450600.1	Wheat	golgi, plastid	80.53	80.1
HORVU7Hr1G101810.4	Barley	plastid	69.47	76.74
HORVU2Hr1G022000.2	Barley	cytosol	54.74	70.75
GSMUA_Achr8P33170_001	Banana	plastid	65.79	65.79
KRH22214	Soybean	nucleus, plastid	64.21	62.89
KRH27125	Soybean	plastid	64.21	62.89
VIT_19s0014g04970.t01	Wine grape	plastid	61.58	61.26
CDY18341	Canola	plastid	60.0	58.16
CDY43032	Canola	cytosol	38.95	57.81
Bra029017.1-P	Field mustard	cytosol	38.95	57.81
Solyc07g063960.2.1	Tomato	nucleus	56.84	57.14
PGSC0003DMT400049598	Potato	plastid	56.84	57.14
CDY42463	Canola	plastid	59.47	56.78
Bra002973.1-P	Field mustard	plastid	59.47	56.78
AT5G54600.1	Thale cress	plastid	58.42	56.06
CDY06636	Canola	plastid	57.89	55.28
Bra022734.1-P	Field mustard	plastid	57.37	54.23
CDY28762	Canola	plastid	57.37	54.23
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	34.21	50.78
PGSC0003DMT400064380	Potato	plastid	58.42	42.53
CDY43816	Canola	nucleus	34.21	37.79
Os12t0135900-00	Rice	cytosol	22.11	26.42
Os11t0139100-01	Rice	cytosol	22.11	26.42

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	EntrezGene:4341869	EMBL:AK060024	EMBL:AK070432	ProteinID:BAD45549.1
ProteinID:BAD45908.1	ProteinID:BAF20301.1	ProteinID:BAS99172.1	ProteinID:EEE66234.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B	EnsemblPlantsGene:Os06g0683200	EnsemblPlants:Os06t0683200-01	PFAM:PF00467
PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	UniProt:Q653V9	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000043A317	RefSeq:XP_015641647.1	:	:	:	:

Description

Similar to 50S ribosomal protein L24, chloroplast precursor (CL24). (Os06t0683200-01)

Coordinates

chr6:-:28472626..28474779

Molecular Weight (calculated)

20797.4 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.265

Length

190 amino acids

Sequence
(BLAST)

001: MAGVAALQGA MASLSISAPG AASTSSFWGH PLSTFAAAPA GVKFMIKTCP IQMRLKRWER KKCKPNSLPV LHKMHVRIGD TVQVIAGREK GKVGEVTRLF
101: KHNSTVIVKD LNLKSKHKKG TEDEPGEIVM IEGPIHSSNV MLYSKEKNVA SRVGHKFLED GTKVRYLVKT GEIIDSAENW VKVFKEGSSE

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.