Factsheet for Os12t0135900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0139100-01	Rice	cytosol	99.37	99.37
EES09222	Sorghum	cytosol	95.6	95.6
EES16542	Sorghum	cytosol	93.71	93.71
Zm00001d052452_P001	Maize	mitochondrion	93.08	93.08
TraesCS4D01G127400.1	Wheat	cytosol	93.08	93.08
TraesCS4B01G132600.1	Wheat	cytosol	93.08	93.08
TraesCS4A01G186300.1	Wheat	cytosol	93.08	93.08
HORVU4Hr1G026060.1	Barley	cytosol	92.45	92.45
GSMUA_AchrUn_...	Banana	cytosol	86.16	86.16
KRH05093	Soybean	cytosol	80.5	80.5
CDY16856	Canola	cytosol	79.87	79.87
AT5G23535.1	Thale cress	cytosol	79.87	79.87
CDX88034	Canola	cytosol	79.87	79.87
CDX87168	Canola	cytosol	79.87	79.87
CDX80371	Canola	cytosol	79.87	79.87
Bra026493.1-P	Field mustard	cytosol	79.87	79.87
Bra009692.1-P	Field mustard	cytosol	79.87	79.87
KRH49799	Soybean	cytosol	79.25	79.25
PGSC0003DMT400079319	Potato	mitochondrion	74.84	74.84
Solyc08g075850.2.1	Tomato	mitochondrion	74.84	74.84
PGSC0003DMT400046331	Potato	cytosol	73.58	74.05
KRG99034	Soybean	cytosol	60.38	69.57
VIT_07s0151g00660.t01	Wine grape	cytosol	78.62	62.5
KRH71399	Soybean	mitochondrion	77.99	55.36
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	30.19	35.04
Os06t0683200-01	Rice	plastid	26.42	22.11

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	EntrezGene:4351443	ProteinID:ABA95752.2	ProteinID:BAT15796.1	ProteinID:EEE52733.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B	EnsemblPlantsGene:Os12g0135900
EnsemblPlants:Os12t0135900-00	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6
UniProt:Q2QY18	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0000D89C15	RefSeq:XP_015618314.1	:	:

Description

Similar to 50S ribosomal protein L24. (Os12t0135900-00)

Coordinates

chr12:-:1747416..1749901

Molecular Weight (calculated)

17720.9 Da

IEP (calculated)

10.861

GRAVY (calculated)

-0.553

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ESGLIKRVIR SQNRVIVEGK NLVKKHIKQG EGHTGGIFSI EAPLHVSNVQ VLDPVTGKPC KIGYKYLEDG
101: TKVRFARGMN ASGAVIPRPE ILKERRKPRP TSPGPKDTRI EHVLEKTYDA KAGIGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.