CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009692.1-P	Field mustard	cytosol	77.54	67.3
Bra026493.1-P	Field mustard	cytosol	77.54	67.3
CDX80371	Canola	cytosol	77.54	67.3
CDX87168	Canola	cytosol	77.54	67.3
CDX88034	Canola	cytosol	77.54	67.3
CDY16856	Canola	cytosol	77.54	67.3
AT5G23535.1	Thale cress	cytosol	76.81	66.67
KRH05093	Soybean	cytosol	76.09	66.04
KRH49799	Soybean	cytosol	75.36	65.41
HORVU4Hr1G026060.1	Barley	cytosol	70.29	61.01
GSMUA_AchrUn_...	Banana	cytosol	69.57	60.38
EES09222	Sorghum	cytosol	69.57	60.38
Os11t0139100-01	Rice	cytosol	69.57	60.38
Os12t0135900-00	Rice	cytosol	69.57	60.38
EES16542	Sorghum	cytosol	68.84	59.75
PGSC0003DMT400079319	Potato	mitochondrion	68.84	59.75
Solyc08g075850.2.1	Tomato	mitochondrion	68.84	59.75
PGSC0003DMT400046331	Potato	cytosol	68.12	59.49
Zm00001d052452_P001	Maize	mitochondrion	68.12	59.12
TraesCS4D01G127400.1	Wheat	cytosol	68.12	59.12
TraesCS4B01G132600.1	Wheat	cytosol	68.12	59.12
TraesCS4A01G186300.1	Wheat	cytosol	68.12	59.12
KRH71399	Soybean	mitochondrion	82.61	50.89
VIT_07s0151g00660.t01	Wine grape	cytosol	71.01	49.0
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	27.54	27.74
KRH22214	Soybean	nucleus, plastid	25.36	18.04
KRH27125	Soybean	plastid	24.64	17.53

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	EMBL:ACUP02010956	EnsemblPlantsGene:GLYMA_18G116100	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:I1N127	InterPro:IPR014722	InterPro:KOW	EnsemblPlants:KRG99034	ProteinID:KRG99034	ProteinID:KRG99034.1
HAMAP:MF_01326_B	PFAM:PF17136	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000295EDED	:

Description

hypothetical protein

Coordinates

chr18:-:14187457..14188291

Molecular Weight (calculated)

15506.4 Da

IEP (calculated)

10.703

GRAVY (calculated)

-0.054

Length

138 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMITRDIDKG ETGIIKRVIR SQNYVIVKKH IKQGKGHEGG IFTVEAPLHA SNVQVLDPVI GYPCKVGVKY LEDGTKVRVS
101: RGIGELGSIV PRPKILKIRT ISRPTICKYL TSLCFFLV

Best Arabidopsis Sequence Match ( AT5G23535.1 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.