CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05093	Soybean	cytosol	93.71	93.71
Bra009692.1-P	Field mustard	cytosol	84.91	84.91
CDY16856	Canola	cytosol	84.91	84.91
CDX88034	Canola	cytosol	84.91	84.91
CDX80371	Canola	cytosol	84.91	84.91
Bra026493.1-P	Field mustard	cytosol	84.91	84.91
CDX87168	Canola	cytosol	84.91	84.91
AT5G23535.1	Thale cress	cytosol	84.28	84.28
Solyc08g075850.2.1	Tomato	mitochondrion	83.02	83.02
PGSC0003DMT400079319	Potato	mitochondrion	83.02	83.02
PGSC0003DMT400046331	Potato	cytosol	81.76	82.28
HORVU4Hr1G026060.1	Barley	cytosol	81.76	81.76
GSMUA_AchrUn_...	Banana	cytosol	81.13	81.13
EES09222	Sorghum	cytosol	80.5	80.5
Zm00001d052452_P001	Maize	mitochondrion	79.87	79.87
TraesCS4D01G127400.1	Wheat	cytosol	79.87	79.87
TraesCS4B01G132600.1	Wheat	cytosol	79.87	79.87
TraesCS4A01G186300.1	Wheat	cytosol	79.87	79.87
Os11t0139100-01	Rice	cytosol	79.87	79.87
Os12t0135900-00	Rice	cytosol	79.25	79.25
EES16542	Sorghum	cytosol	79.25	79.25
KRG99034	Soybean	cytosol	65.41	75.36
VIT_07s0151g00660.t01	Wine grape	cytosol	86.16	68.5
KRH71399	Soybean	mitochondrion	89.31	63.39
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	27.04	31.39
KRH22214	Soybean	nucleus, plastid	26.42	21.65
KRH27125	Soybean	plastid	25.79	21.13

Protein Annotations

EntrezGene:100305917	MapMan:17.7.1.1.22	Gene3D:2.30.30.30	EMBL:ACUP02004643	EMBL:BT089750	UniProt:C6SX56
EnsemblPlantsGene:GLYMA_07G180400	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW
EnsemblPlants:KRH49799	ProteinID:KRH49799	ProteinID:KRH49799.1	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136
ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001B151FC	:

Description

hypothetical protein

Coordinates

chr7:+:34670400..34673100

Molecular Weight (calculated)

17604.8 Da

IEP (calculated)

10.982

GRAVY (calculated)

-0.503

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKVLRGDN VMIIRGKDKG ETGNIKRVIR TQNRVIVEGK NLVKKHIKQG QGHEGGIFTV EAPIHASNVQ VIDPVTRKPC KVGTKYLEDG
101: SKVRVSRGIG ASGSIIPRPE ILKIRTTPRP TVLGPKDTPM DLVLEKTYDA KTGRGMPEL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.