Factsheet for TraesCS4B01G132600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G127400.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G186300.1	Wheat	cytosol	98.74	98.74
HORVU4Hr1G026060.1	Barley	cytosol	96.86	96.86
Os11t0139100-01	Rice	cytosol	93.71	93.71
Os12t0135900-00	Rice	cytosol	93.08	93.08
EES09222	Sorghum	cytosol	93.08	93.08
EES16542	Sorghum	cytosol	91.19	91.19
Zm00001d052452_P001	Maize	mitochondrion	89.94	89.94
GSMUA_AchrUn_...	Banana	cytosol	84.28	84.28
KRH49799	Soybean	cytosol	79.87	79.87
KRH05093	Soybean	cytosol	79.25	79.25
AT5G23535.1	Thale cress	cytosol	78.62	78.62
CDY16856	Canola	cytosol	78.62	78.62
CDX88034	Canola	cytosol	78.62	78.62
CDX87168	Canola	cytosol	78.62	78.62
CDX80371	Canola	cytosol	78.62	78.62
Bra026493.1-P	Field mustard	cytosol	78.62	78.62
Bra009692.1-P	Field mustard	cytosol	78.62	78.62
PGSC0003DMT400079319	Potato	mitochondrion	74.84	74.84
Solyc08g075850.2.1	Tomato	mitochondrion	74.84	74.84
PGSC0003DMT400046331	Potato	cytosol	73.58	74.05
KRG99034	Soybean	cytosol	59.12	68.12
VIT_07s0151g00660.t01	Wine grape	cytosol	77.36	61.5
KRH71399	Soybean	mitochondrion	77.36	54.91
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	30.19	35.04
TraesCS7B01G350400.1	Wheat	plastid	25.16	20.94
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	13.84	17.19

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:KOW
HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079
EnsemblPlantsGene:TraesCS4B01G132600	EnsemblPlants:TraesCS4B01G132600.1	InterPro:Translation_prot_SH3-like_sf	TIGR:cd06089	:	:

Description

No Description!

Coordinates

chr4B:-:172504033..172506588

Molecular Weight (calculated)

17681.8 Da

IEP (calculated)

10.760

GRAVY (calculated)

-0.555

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ESGLIKRVIR SQNRVIVEGK NLVKKHIKQG EGQTGGIFSI EAPLHVSNVQ VIDPVTGKPC KTTYKYLPDG
101: TKVRVSRGMY ASGAVIPRPE ILKERKKPRP TSHGPKDTPI EHVLEKTYDA KAGIGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.