CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09222	Sorghum	cytosol	96.23	96.23
Os11t0139100-01	Rice	cytosol	94.34	94.34
Os12t0135900-00	Rice	cytosol	93.71	93.71
TraesCS4A01G186300.1	Wheat	cytosol	91.19	91.19
TraesCS4D01G127400.1	Wheat	cytosol	91.19	91.19
TraesCS4B01G132600.1	Wheat	cytosol	91.19	91.19
HORVU4Hr1G026060.1	Barley	cytosol	90.57	90.57
GSMUA_AchrUn_...	Banana	cytosol	83.65	83.65
Bra009692.1-P	Field mustard	cytosol	79.87	79.87
AT5G23535.1	Thale cress	cytosol	79.87	79.87
CDY16856	Canola	cytosol	79.87	79.87
CDX88034	Canola	cytosol	79.87	79.87
CDX87168	Canola	cytosol	79.87	79.87
CDX80371	Canola	cytosol	79.87	79.87
Bra026493.1-P	Field mustard	cytosol	79.87	79.87
KRH49799	Soybean	cytosol	79.25	79.25
KRH05093	Soybean	cytosol	78.62	78.62
PGSC0003DMT400079319	Potato	mitochondrion	75.47	75.47
Solyc08g075850.2.1	Tomato	mitochondrion	75.47	75.47
PGSC0003DMT400046331	Potato	cytosol	74.21	74.68
KRG99034	Soybean	cytosol	59.75	68.84
VIT_07s0151g00660.t01	Wine grape	cytosol	76.73	61.0
KRH71399	Soybean	mitochondrion	77.36	54.91
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	29.56	34.31
EER90241	Sorghum	plastid	28.3	23.68

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	EntrezGene:8071432	UniProt:C5YQN4	EnsemblPlants:EES16542	ProteinID:EES16542
ProteinID:EES16542.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW
HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	EnsemblPlantsGene:SORBI_3008G017700	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001A883DC	RefSeq:XP_002442704.1	:	:

Description

hypothetical protein

Coordinates

chr8:-:1438572..1441435

Molecular Weight (calculated)

17580.7 Da

IEP (calculated)

10.668

GRAVY (calculated)

-0.495

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGLIKRVIR SQNRVIVEGK NLVKKHIKQG EGNTGGIFSI EAPLHVSNVQ VVDPVTGKAC KVGYKYLEDG
101: TKVRFARGMN ASGAVIPRPE ILKERKKPRP TSPGSKDTPI ELVLEKTYDD KAGIGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.