Factsheet for GSMUA_AchrUn_randomP18160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0139100-01	Rice	cytosol	86.79	86.79
Os12t0135900-00	Rice	cytosol	86.16	86.16
EES09222	Sorghum	cytosol	84.91	84.91
HORVU4Hr1G026060.1	Barley	cytosol	84.91	84.91
TraesCS4D01G127400.1	Wheat	cytosol	84.28	84.28
TraesCS4B01G132600.1	Wheat	cytosol	84.28	84.28
Zm00001d052452_P001	Maize	mitochondrion	83.65	83.65
TraesCS4A01G186300.1	Wheat	cytosol	83.65	83.65
EES16542	Sorghum	cytosol	83.65	83.65
KRH05093	Soybean	cytosol	81.13	81.13
KRH49799	Soybean	cytosol	81.13	81.13
AT5G23535.1	Thale cress	cytosol	76.73	76.73
CDY16856	Canola	cytosol	76.73	76.73
CDX88034	Canola	cytosol	76.73	76.73
CDX87168	Canola	cytosol	76.73	76.73
CDX80371	Canola	cytosol	76.73	76.73
Bra026493.1-P	Field mustard	cytosol	76.73	76.73
Bra009692.1-P	Field mustard	cytosol	76.73	76.73
PGSC0003DMT400079319	Potato	mitochondrion	75.47	75.47
Solyc08g075850.2.1	Tomato	mitochondrion	75.47	75.47
PGSC0003DMT400046331	Potato	cytosol	74.84	75.32
KRG99034	Soybean	cytosol	60.38	69.57
VIT_07s0151g00660.t01	Wine grape	cytosol	81.13	64.5
KRH71399	Soybean	mitochondrion	79.25	56.25
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	30.19	35.04
GSMUA_Achr8P33170_001	Banana	plastid	28.93	24.21

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG18160_001
EnsemblPlants:GSMUA_AchrUn_randomP18160_001	EnsemblPlants:GSMUA_AchrUn_randomT18160_001	InterPro:IPR014722	InterPro:KOW	UniProt:M0UA75	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002959955	:	:	:	:	:

Description

50S ribosomal protein L24 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18160_001]

Coordinates

chrchrUn_random:-:85932928..85946961

Molecular Weight (calculated)

17590.7 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.470

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKII KHWKILRGDN VMIIRGKDKG ETGIIKRVIR SQNRVIVEGK NLVKKHIKQG QGHEGGIFSI ESPLHVSNVQ VLDPATGKPC KIGYKYLEDG
101: SKVRVSRGLA ASGTVIPRPE ILKERRKPRP NIVGPKDTPI DLVLDKTYDA KSGIGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.