CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80371	Canola	cytosol	100.0	100.0
CDX88034	Canola	cytosol	100.0	100.0
CDY16856	Canola	cytosol	100.0	100.0
AT5G23535.1	Thale cress	cytosol	99.37	99.37
KRH05093	Soybean	cytosol	85.53	85.53
KRH49799	Soybean	cytosol	84.91	84.91
Solyc08g075850.2.1	Tomato	mitochondrion	82.39	82.39
PGSC0003DMT400079319	Potato	mitochondrion	82.39	82.39
PGSC0003DMT400046331	Potato	cytosol	81.13	81.65
EES09222	Sorghum	cytosol	81.13	81.13
HORVU4Hr1G026060.1	Barley	cytosol	80.5	80.5
Os11t0139100-01	Rice	cytosol	80.5	80.5
Os12t0135900-00	Rice	cytosol	79.87	79.87
Zm00001d052452_P001	Maize	mitochondrion	79.87	79.87
EES16542	Sorghum	cytosol	79.87	79.87
TraesCS4A01G186300.1	Wheat	cytosol	78.62	78.62
TraesCS4B01G132600.1	Wheat	cytosol	78.62	78.62
TraesCS4D01G127400.1	Wheat	cytosol	78.62	78.62
KRG99034	Soybean	cytosol	67.3	77.54
GSMUA_AchrUn_...	Banana	cytosol	76.73	76.73
VIT_07s0151g00660.t01	Wine grape	cytosol	82.39	65.5
KRH71399	Soybean	mitochondrion	84.91	60.27
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	26.42	30.66
CDY43032	Canola	cytosol	24.53	30.47
CDY18341	Canola	plastid	25.16	20.41
CDY42463	Canola	plastid	25.16	20.1
CDY06636	Canola	plastid	25.16	20.1
CDY28762	Canola	plastid	23.9	18.91
CDY43816	Canola	nucleus	15.09	13.95

Protein Annotations

MapMan:17.7.1.1.22	Gene3D:2.30.30.30	GO:A0A078CT87	UniProt:A0A078CT87	EnsemblPlants:CDX87168	ProteinID:CDX87168
ProteinID:CDX87168.1	ProteinID:CDY16856.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00146090001
InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108
PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739
SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000253F09C	:	:

Description

BnaC09g04830DBnaA06g26250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CT87]

Coordinates

chrLK031849:-:899165..900832

Molecular Weight (calculated)

17529.5 Da

IEP (calculated)

10.764

GRAVY (calculated)

-0.528

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRTTPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.