CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002973.1-P	Field mustard	plastid	100.0	100.0
CDY18341	Canola	plastid	96.48	97.96
CDY43032	Canola	cytosol	60.8	94.53
CDY06636	Canola	plastid	93.97	93.97
AT5G54600.1	Thale cress	plastid	92.46	92.93
CDY28762	Canola	plastid	88.94	88.06
Solyc07g063960.2.1	Tomato	nucleus	66.33	69.84
PGSC0003DMT400049598	Potato	plastid	64.82	68.25
GSMUA_Achr8P33170_001	Banana	plastid	64.32	67.37
KRH27125	Soybean	plastid	64.82	66.49
KRH22214	Soybean	nucleus, plastid	64.32	65.98
VIT_19s0014g04970.t01	Wine grape	plastid	63.32	65.97
EER90241	Sorghum	plastid	57.29	60.0
Os06t0683200-01	Rice	plastid	56.78	59.47
HORVU2Hr1G022000.2	Barley	cytosol	41.71	56.46
CDY43816	Canola	nucleus	48.74	56.4
Zm00001d014488_P001	Maize	plastid	57.29	55.07
HORVU7Hr1G101810.4	Barley	plastid	47.24	54.65
TraesCS7A01G450600.1	Wheat	golgi, plastid	52.26	54.45
TraesCS7B01G350400.1	Wheat	plastid	52.26	54.45
TraesCS7D01G439900.1	Wheat	plastid	52.26	54.45
PGSC0003DMT400064380	Potato	plastid	62.81	47.89
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	24.62	38.28
CDY16856	Canola	cytosol	20.1	25.16
CDX88034	Canola	cytosol	20.1	25.16
CDX87168	Canola	cytosol	20.1	25.16
CDX80371	Canola	cytosol	20.1	25.16

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078I080	UniProt:A0A078I080	EnsemblPlants:CDY42463	ProteinID:CDY42463
ProteinID:CDY42463.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00074889001	InterPro:IPR014722
InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903
PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00025440B0	SEG:seg	:	:

Description

BnaA10g08390DBnaA10g08390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I080]

Coordinates

chrLK032525:-:124694..125992

Molecular Weight (calculated)

22146.1 Da

IEP (calculated)

10.534

GRAVY (calculated)

-0.356

Length

199 amino acids

Sequence
(BLAST)

001: MATMSALQSS FTSLSISSNS SFLGQRLLSP IPLSVASPVK LAENHPCLVF AKLKRWERKK CKPNSLPILH KMHVKFGDTV KVISGRDKGK IGEVTKIFTH
101: NSTIVIKDVN LKTKHMKSRE EGEPGQILKI EAPIHSSNVM LYSKEKEVVS RVGHKVLEDG QKVRYLIKTG ELIDTIEKWK QLKEAKDKET TQVAAASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.