Factsheet for Bra002973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42463	Canola	plastid	100.0	100.0
Bra029017.1-P	Field mustard	cytosol	60.8	94.53
CDY06636	Canola	plastid	93.97	93.97
AT5G54600.1	Thale cress	plastid	92.46	92.93
Bra022734.1-P	Field mustard	plastid	88.94	88.06
Solyc07g063960.2.1	Tomato	nucleus	66.33	69.84
PGSC0003DMT400049598	Potato	plastid	64.82	68.25
GSMUA_Achr8P33170_001	Banana	plastid	64.32	67.37
KRH27125	Soybean	plastid	64.82	66.49
KRH22214	Soybean	nucleus, plastid	64.32	65.98
VIT_19s0014g04970.t01	Wine grape	plastid	63.32	65.97
EER90241	Sorghum	plastid	57.29	60.0
Os06t0683200-01	Rice	plastid	56.78	59.47
HORVU2Hr1G022000.2	Barley	cytosol	41.71	56.46
Zm00001d014488_P001	Maize	plastid	57.29	55.07
HORVU7Hr1G101810.4	Barley	plastid	47.24	54.65
TraesCS7A01G450600.1	Wheat	golgi, plastid	52.26	54.45
TraesCS7B01G350400.1	Wheat	plastid	52.26	54.45
TraesCS7D01G439900.1	Wheat	plastid	52.26	54.45
PGSC0003DMT400064380	Potato	plastid	62.81	47.89
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	24.62	38.28
Bra026493.1-P	Field mustard	cytosol	20.1	25.16
Bra009692.1-P	Field mustard	cytosol	20.1	25.16

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	EnsemblPlantsGene:Bra002973	EnsemblPlants:Bra002973.1	EnsemblPlants:Bra002973.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW	UniProt:M4CFJ1	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI00025440B0	SEG:seg	:	:	:	:

Description

AT5G54600 (E=4e-090) | 50S ribosomal protein L24, chloroplast (CL24)

Coordinates

chrA10:+:6344372..6345391

Molecular Weight (calculated)

22146.1 Da

IEP (calculated)

10.534

GRAVY (calculated)

-0.356

Length

199 amino acids

Sequence
(BLAST)

001: MATMSALQSS FTSLSISSNS SFLGQRLLSP IPLSVASPVK LAENHPCLVF AKLKRWERKK CKPNSLPILH KMHVKFGDTV KVISGRDKGK IGEVTKIFTH
101: NSTIVIKDVN LKTKHMKSRE EGEPGQILKI EAPIHSSNVM LYSKEKEVVS RVGHKVLEDG QKVRYLIKTG ELIDTIEKWK QLKEAKDKET TQVAAASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.