Factsheet for Bra029017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43032	Canola	cytosol	100.0	100.0
Bra002973.1-P	Field mustard	plastid	94.53	60.8
AT5G54600.1	Thale cress	plastid	92.19	59.6
Bra022734.1-P	Field mustard	plastid	88.28	56.22
Solyc07g063960.2.1	Tomato	nucleus	67.19	45.5
PGSC0003DMT400049598	Potato	plastid	67.19	45.5
KRH27125	Soybean	plastid	68.75	45.36
KRH22214	Soybean	nucleus, plastid	68.75	45.36
HORVU2Hr1G022000.2	Barley	cytosol	50.78	44.22
GSMUA_Achr8P33170_001	Banana	plastid	64.84	43.68
VIT_19s0014g04970.t01	Wine grape	plastid	64.84	43.46
HORVU7Hr1G101810.4	Barley	plastid	56.25	41.86
EER90241	Sorghum	plastid	58.59	39.47
Os06t0683200-01	Rice	plastid	57.81	38.95
TraesCS7A01G450600.1	Wheat	golgi, plastid	56.25	37.7
TraesCS7B01G350400.1	Wheat	plastid	56.25	37.7
TraesCS7D01G439900.1	Wheat	plastid	56.25	37.7
Zm00001d014488_P001	Maize	plastid	59.38	36.72
PGSC0003DMT400064380	Potato	plastid	64.06	31.42
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	25.0	25.0
Bra026493.1-P	Field mustard	cytosol	30.47	24.53
Bra009692.1-P	Field mustard	cytosol	30.47	24.53

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	EnsemblPlantsGene:Bra029017	EnsemblPlants:Bra029017.1	EnsemblPlants:Bra029017.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW	UniProt:M4EJQ1	HAMAP:MF_01326_B
PFAM:PF00467	PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000253FEF2	:	:	:	:	:

Description

AT5G54600 (E=8e-063) | 50S ribosomal protein L24, chloroplast (CL24)

Coordinates

chrA03:-:5884702..5885158

Molecular Weight (calculated)

14237.3 Da

IEP (calculated)

10.279

GRAVY (calculated)

-0.464

Length

128 amino acids

Sequence
(BLAST)

001: MHVKFGDTVK VISGRDKGKI GEVTKIFTHN STIVIKDVNL KTKHMKSREE GEPGQILKIE APIHSSNVML HSKEKEVVSR VGHKVLEDGH KVRYLILTGE
101: LIDTVAKWKQ LKEAKDKETT QAAVASAS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.