Factsheet for Zm00001d014488_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90241	Sorghum	plastid	88.89	96.84
Os06t0683200-01	Rice	plastid	80.68	87.89
TraesCS7D01G439900.1	Wheat	plastid	73.91	80.1
TraesCS7B01G350400.1	Wheat	plastid	73.91	80.1
TraesCS7A01G450600.1	Wheat	golgi, plastid	73.91	80.1
HORVU7Hr1G101810.4	Barley	plastid	62.32	75.0
HORVU2Hr1G022000.2	Barley	cytosol	50.72	71.43
GSMUA_Achr8P33170_001	Banana	plastid	59.42	64.74
KRH27125	Soybean	plastid	57.49	61.34
KRH22214	Soybean	nucleus, plastid	57.0	60.82
CDY43032	Canola	cytosol	36.72	59.38
Bra029017.1-P	Field mustard	cytosol	36.72	59.38
CDY18341	Canola	plastid	56.04	59.18
VIT_19s0014g04970.t01	Wine grape	plastid	54.11	58.64
PGSC0003DMT400049598	Potato	plastid	52.66	57.67
AT5G54600.1	Thale cress	plastid	55.07	57.58
Bra002973.1-P	Field mustard	plastid	55.07	57.29
CDY42463	Canola	plastid	55.07	57.29
CDY06636	Canola	plastid	55.07	57.29
Solyc07g063960.2.1	Tomato	nucleus	52.17	57.14
CDY28762	Canola	plastid	54.59	56.22
Bra022734.1-P	Field mustard	plastid	54.59	56.22
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	31.4	50.78
PGSC0003DMT400064380	Potato	plastid	52.17	41.38
CDY43816	Canola	nucleus	31.4	37.79
Zm00001d052452_P001	Maize	mitochondrion	21.26	27.67

Protein Annotations

EntrezGene:100273201	MapMan:17.7.2.1.22	Gene3D:2.30.30.30	UniProt:A0A1D6GTP1	ProteinID:AQK66366.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:KOW	HAMAP:MF_01326_B	PFAM:PF00467
PFAM:PF17136	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24
InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0008431D55
EnsemblPlantsGene:Zm00001d014488	EnsemblPlants:Zm00001d014488_P001	EnsemblPlants:Zm00001d014488_T001	SEG:seg	:	:

Description

50S ribosomal protein L24 chloroplastic

Coordinates

chr5:-:49999383..50001806

Molecular Weight (calculated)

22818.0 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.216

Length

207 amino acids

Sequence
(BLAST)

001: MAGMASLQGA MASLSISALG AATASSSSFW GNRLATYSAP QPGVCSCFPI PFRSADGLVR FMVKICPIEM RLKRWERKKC KPNSLPVLHK MHVRIGDTVQ
101: VIAGREKGKV GEVTRLFKHN STVIVKDLNL KSKHKKGTDD EPGEIVMIEG PIHSSNVMLY SKEKSVVSRV GHKFLEDGTK VRYLVKTGEV IDSVEKWVKV
201: FKEGNSE

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.