CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28762	Canola	plastid	56.98	48.76
CDY42463	Canola	plastid	56.4	48.74
CDY18341	Canola	plastid	54.65	47.96
CDY06636	Canola	plastid	55.23	47.74
CDY43032	Canola	cytosol	34.88	46.88
AT5G54600.1	Thale cress	plastid	53.49	46.46
Solyc07g063960.2.1	Tomato	nucleus	42.44	38.62
PGSC0003DMT400049598	Potato	plastid	41.86	38.1
GSMUA_Achr8P33170_001	Banana	plastid	40.7	36.84
KRH22214	Soybean	nucleus, plastid	40.12	35.57
KRH27125	Soybean	plastid	40.12	35.57
HORVU2Hr1G022000.2	Barley	cytosol	30.23	35.37
VIT_19s0014g04970.t01	Wine grape	plastid	38.95	35.08
EER90241	Sorghum	plastid	37.79	34.21
Os06t0683200-01	Rice	plastid	37.79	34.21
HORVU7Hr1G101810.4	Barley	plastid	32.56	32.56
Zm00001d014488_P001	Maize	plastid	37.79	31.4
TraesCS1B01G204000.1	Wheat	endoplasmic reticulum, extracellular	23.26	31.25
TraesCS7A01G450600.1	Wheat	golgi, plastid	34.3	30.89
TraesCS7B01G350400.1	Wheat	plastid	34.3	30.89
TraesCS7D01G439900.1	Wheat	plastid	34.3	30.89
PGSC0003DMT400064380	Potato	plastid	40.7	26.82
CDY16856	Canola	cytosol	13.95	15.09
CDX88034	Canola	cytosol	13.95	15.09
CDX87168	Canola	cytosol	13.95	15.09
CDX80371	Canola	cytosol	13.95	15.09

Protein Annotations

MapMan:17.7.2.1.22	Gene3D:2.30.30.30	GO:A0A078I1X5	UniProt:A0A078I1X5	EnsemblPlants:CDY43816	ProteinID:CDY43816
ProteinID:CDY43816.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00077326001	InterPro:IPR014722	InterPro:KOW
PFAM:PF00467	ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF0	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24
InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EB0BC5	SEG:seg

Description

BnaC03g14490DBnaC03g14490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1X5]

Coordinates

chrLK032569:-:39014..39884

Molecular Weight (calculated)

19520.4 Da

IEP (calculated)

10.034

GRAVY (calculated)

-0.999

Length

172 amino acids

Sequence
(BLAST)

001: MTKVEEEETS VSSLGSESCR ARENKVEKNG EHLDGLVIVQ VKHSENPCFV FAKLKRWERK KCKPNSLPVL HKMHVKFGDM VKVISGRDKG KIGEVTKRPQ
101: QYHCNQRDKD VNLKAKHMKS REEGEPGQIL KVLDDGKIPD QNGGTNSIEK WKQLREAKDK ERTTQVAVSS AS

Best Arabidopsis Sequence Match ( AT5G54600.1 )
(BLAST)

001: MATMSALQSS FTSLSLSPSS SFLGQRLISP ISLSVTSPVK PAENPCLVLA KLKRWERKEC KPNSLPILHK MHVKFGDTVK VISGRDKGKI GEVTKIFTHN
101: STIVIKDVNL KTKHMKSREE GEPGQIVKIE APIHSSNVML YSKEKDVVSR VGHKVLEDGQ KVRYLIKTGE LIDTIEKWKL LKEAKDKETT QVAVTSAS

Arabidopsis Description

RPL24SVR8 [Source:UniProtKB/TrEMBL;Acc:A0A178U954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.