CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49799	Soybean	cytosol	93.71	93.71
Bra009692.1-P	Field mustard	cytosol	85.53	85.53
Bra026493.1-P	Field mustard	cytosol	85.53	85.53
CDX80371	Canola	cytosol	85.53	85.53
CDX87168	Canola	cytosol	85.53	85.53
CDX88034	Canola	cytosol	85.53	85.53
CDY16856	Canola	cytosol	85.53	85.53
AT5G23535.1	Thale cress	cytosol	84.91	84.91
Solyc08g075850.2.1	Tomato	mitochondrion	81.13	81.13
PGSC0003DMT400079319	Potato	mitochondrion	81.13	81.13
GSMUA_AchrUn_...	Banana	cytosol	81.13	81.13
HORVU4Hr1G026060.1	Barley	cytosol	81.13	81.13
Os11t0139100-01	Rice	cytosol	81.13	81.13
Zm00001d052452_P001	Maize	mitochondrion	80.5	80.5
Os12t0135900-00	Rice	cytosol	80.5	80.5
PGSC0003DMT400046331	Potato	cytosol	79.87	80.38
EES09222	Sorghum	cytosol	79.87	79.87
TraesCS4A01G186300.1	Wheat	cytosol	79.25	79.25
TraesCS4B01G132600.1	Wheat	cytosol	79.25	79.25
TraesCS4D01G127400.1	Wheat	cytosol	79.25	79.25
EES16542	Sorghum	cytosol	78.62	78.62
KRG99034	Soybean	cytosol	66.04	76.09
VIT_07s0151g00660.t01	Wine grape	cytosol	88.05	70.0
KRH71399	Soybean	mitochondrion	89.94	63.84
GSMUA_Achr6P25160_001	Banana	cytosol, plastid	28.3	32.85
KRH22214	Soybean	nucleus, plastid	25.79	21.13
KRH27125	Soybean	plastid	25.16	20.62

Protein Annotations

EntrezGene:100499816	MapMan:17.7.1.1.22	Gene3D:2.30.30.30	EMBL:ACUP02010673	EnsemblPlantsGene:GLYMA_17G206800	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	UniProt:I1MWP1	InterPro:IPR014722	InterPro:KOW	EnsemblPlants:KRH05093
ProteinID:KRH05093	ProteinID:KRH05093.1	ProteinID:KRH05094.1	HAMAP:MF_01326_B	PFAM:PF00467	PFAM:PF17136
ScanProsite:PS01108	PANTHER:PTHR12903	PANTHER:PTHR12903:SF6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24	InterPro:Ribosomal_L24/26_CS
SMART:SM00739	SUPFAM:SSF50104	TIGRFAMs:TIGR01079	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00023D5535	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:33884210..33886354

Molecular Weight (calculated)

17547.7 Da

IEP (calculated)

10.855

GRAVY (calculated)

-0.455

Length

159 amino acids

Sequence
(BLAST)

001: MGWKAAEKLI RHWKVVRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLVKKHIKQG QGHEGGIFTV EAPIHASNVQ VLDPVTGKPC KIGHKYLEDG
101: TKVRVSRGIG SSGSIIPRPE ILMIRTTPRP TVLGPKDTPM DLVLEKTYDA KTGRGMPEL

Best Arabidopsis Sequence Match ( AT5G23535.2 )
(BLAST)

001: MGWKAAEKLI RHWKILRGDN VMIIRGKDKG ETGTIKRVIR SQNRVIVEGK NLIKKHIKGG PDHEGGIFTV EAPLHASNVQ VVDPVTGRPC KVGVKYLEDG
101: TKVRVARGTG TSGSIIPRPE ILKIRATPRP TTAGPKDTPM EFVWEQTYDA KTGKGMPDL

Arabidopsis Description

50S ribosomal protein L24 [Source:UniProtKB/TrEMBL;Acc:Q9LT09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.