CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033171.1-P	Field mustard	cytosol	100.0	100.0
CDX94253	Canola	cytosol	99.48	99.48
CDX86863	Canola	cytosol	99.48	98.97
CDX99541	Canola	cytosol	99.48	98.97
AT4G10450.1	Thale cress	cytosol	94.33	94.33
CDX87811	Canola	cytosol, extracellular	89.69	89.69
CDX93796	Canola	cytosol	89.69	89.69
CDY14882	Canola	cytosol	88.14	88.14
CDY32946	Canola	cytosol, extracellular	88.14	88.14
CDX96888	Canola	cytosol	88.14	88.14
CDY43615	Canola	cytosol	74.23	85.71
PGSC0003DMT400064920	Potato	cytosol	85.05	85.05
GSMUA_Achr2P00380_001	Banana	cytosol	43.3	84.85
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	84.54	84.54
KRH64280	Soybean	nucleus	83.51	84.38
KRH53659	Soybean	nucleus	83.51	84.38
KRH53658	Soybean	cytosol	83.51	84.38
KRH53656	Soybean	cytosol	83.51	84.38
Solyc12g096700.1.1	Tomato	nucleus	84.02	84.02
Solyc06g073310.2.1	Tomato	nucleus, plastid	84.02	84.02
VIT_16s0098g00730.t01	Wine grape	cytosol	83.51	83.94
PGSC0003DMT400075242	Potato	cytosol	79.9	83.78
PGSC0003DMT400069184	Potato	cytosol	79.38	83.24
VIT_09s0002g01620.t01	Wine grape	cytosol	82.47	82.9
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	42.27	82.0
GSMUA_Achr5P20390_001	Banana	cytosol	41.24	80.0
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	77.32	79.37
TraesCS3B01G011300.1	Wheat	cytosol	77.32	79.37
TraesCS3D01G003200.1	Wheat	cytosol	76.8	78.84
TraesCS4A01G472200.1	Wheat	cytosol	76.8	78.84
TraesCS7A01G020200.1	Wheat	cytosol	76.8	78.84
TraesCS3B01G011900.1	Wheat	cytosol	76.8	78.84
HORVU7Hr1G002060.1	Barley	cytosol	76.8	78.84
TraesCS3A01G007300.1	Wheat	cytosol	76.8	78.84
TraesCS3B01G006500.1	Wheat	cytosol	76.8	78.84
EER89049	Sorghum	cytosol	76.8	78.42
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	76.8	78.42
CDY07742	Canola	cytosol	24.23	78.33
TraesCS3D01G003800.1	Wheat	cytosol	76.29	78.31
Zm00001d035902_P001	Maize	cytosol	76.29	77.89
Zm00001d035901_P001	Maize	plasma membrane, plastid	76.29	77.89
Zm00001d045577_P003	Maize	cytosol	75.77	77.37
Zm00001d045578_P001	Maize	plastid	75.77	77.37
OQU84143	Sorghum	cytosol	56.19	76.76
Os09t0485900-01	Rice	cytosol	74.74	76.32
HORVU0Hr1G006040.1	Barley	cytosol	19.59	71.7
KRH64273	Soybean	endoplasmic reticulum, nucleus	67.53	70.05
HORVU0Hr1G006020.2	Barley	cytosol, plastid	76.8	68.04
HORVU7Hr1G043940.1	Barley	cytosol	30.93	65.93
HORVU2Hr1G058720.1	Barley	cytosol	29.9	63.74
HORVU3Hr1G001140.5	Barley	plastid	76.8	63.68
Solyc06g034380.1.1	Tomato	cytosol	41.75	61.36
KRH30764	Soybean	cytosol	29.38	61.29
Solyc12g017290.1.1	Tomato	cytosol	40.21	60.47
TraesCS7D01G016500.2	Wheat	nucleus	76.8	56.23

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:A0A078GKX8	UniProt:A0A078GKX8	EnsemblPlants:CDY25258	ProteinID:CDY25258
ProteinID:CDY25258.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	EnsemblPlantsGene:GSBRNA2T00029304001	InterPro:IPR036789	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700
PANTHER:PTHR11655	PANTHER:PTHR11655:SF23	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
SUPFAM:SSF56053	UniParc:UPI00025455D2	:	:	:	:

Description

BnaA02g21980DBnaA02g21980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKX8]

Coordinates

chrLK032172:-:243275..244501

Molecular Weight (calculated)

21815.7 Da

IEP (calculated)

10.266

GRAVY (calculated)

-0.219

Length

194 amino acids

Sequence
(BLAST)

001: MKTILSSETM DIPEGVVIKV HAKVIEVEGP RGKLTRDFKH LNLDFQLIKD AVTGKRQLKI DSWFGSRKAS ASIRTALSHV SNLIAGVTQG FLYKMRFVYA
101: HFPINASISG NNKSIEIRNF LGEKKVRKVD MLDGVTIVRS EKVKDEITLE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE

Best Arabidopsis Sequence Match ( AT4G10450.1 )
(BLAST)

001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE

Arabidopsis Description

RPL9D60S ribosomal protein L9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.