CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	KRH14106	AT5G35750.1	18642946
AT1G33120.1	KRH74010	AT5G35750.1	18642946
AT1G33140.1	KRH14106	AT5G35750.1	18642946
AT1G33140.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00380_001	Banana	cytosol	55.91	52.53
GSMUA_Achr5P20390_001	Banana	cytosol	52.69	49.0
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	52.69	49.0
OQU84143	Sorghum	cytosol	54.84	35.92
CDY43615	Canola	cytosol	61.29	33.93
KRH64280	Soybean	nucleus	68.82	33.33
KRH53656	Soybean	cytosol	67.74	32.81
KRH53658	Soybean	cytosol	67.74	32.81
KRH53659	Soybean	nucleus	67.74	32.81
PGSC0003DMT400075242	Potato	cytosol	62.37	31.35
PGSC0003DMT400069184	Potato	cytosol	61.29	30.81
VIT_16s0098g00730.t01	Wine grape	cytosol	63.44	30.57
VIT_09s0002g01620.t01	Wine grape	cytosol	62.37	30.05
PGSC0003DMT400064920	Potato	cytosol	62.37	29.9
Solyc06g073310.2.1	Tomato	nucleus, plastid	62.37	29.9
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	62.37	29.9
Solyc12g096700.1.1	Tomato	nucleus	62.37	29.9
AT4G10450.1	Thale cress	cytosol	62.37	29.9
CDX99541	Canola	cytosol	62.37	29.74
CDX86863	Canola	cytosol	62.37	29.74
AT1G33140.1	Thale cress	cytosol	61.29	29.38
CDX87811	Canola	cytosol, extracellular	61.29	29.38
Bra033171.1-P	Field mustard	cytosol	61.29	29.38
Bra035980.1-P	Field mustard	cytosol	61.29	29.38
AT1G33120.1	Thale cress	cytosol	61.29	29.38
Bra037917.1-P	Field mustard	cytosol	61.29	29.38
Bra039999.1-P	Field mustard	cytosol	61.29	29.38
CDX93796	Canola	cytosol	61.29	29.38
CDX94253	Canola	cytosol	61.29	29.38
CDY14882	Canola	cytosol	61.29	29.38
CDY25258	Canola	cytosol, plasma membrane	61.29	29.38
CDY32946	Canola	cytosol, extracellular	61.29	29.38
CDX96888	Canola	cytosol	60.22	28.87
HORVU0Hr1G006040.1	Barley	cytosol	16.13	28.3
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	56.99	28.04
TraesCS3B01G011300.1	Wheat	cytosol	56.99	28.04
TraesCS7A01G020200.1	Wheat	cytosol	55.91	27.51
TraesCS4A01G472200.1	Wheat	cytosol	55.91	27.51
TraesCS3D01G003800.1	Wheat	cytosol	55.91	27.51
HORVU7Hr1G002060.1	Barley	cytosol	55.91	27.51
TraesCS3D01G003200.1	Wheat	cytosol	55.91	27.51
TraesCS3B01G011900.1	Wheat	cytosol	55.91	27.51
TraesCS3A01G007300.1	Wheat	cytosol	55.91	27.51
TraesCS3B01G006500.1	Wheat	cytosol	55.91	27.51
Zm00001d035901_P001	Maize	plasma membrane, plastid	55.91	27.37
Os09t0485900-01	Rice	cytosol	55.91	27.37
Zm00001d045578_P001	Maize	plastid	55.91	27.37
Zm00001d045577_P003	Maize	cytosol	55.91	27.37
Zm00001d035902_P001	Maize	cytosol	55.91	27.37
EER89049	Sorghum	cytosol	55.91	27.37
Solyc06g034380.1.1	Tomato	cytosol	38.71	27.27
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	54.84	26.84
HORVU0Hr1G006020.2	Barley	cytosol, plastid	55.91	23.74
HORVU3Hr1G001140.5	Barley	plastid	55.91	22.22
KRH64273	Soybean	endoplasmic reticulum, nucleus	39.78	19.79
TraesCS7D01G016500.2	Wheat	nucleus	55.91	19.62
Solyc12g017290.1.1	Tomato	cytosol	25.81	18.6
HORVU2Hr1G058720.1	Barley	cytosol	4.3	4.4
HORVU7Hr1G043940.1	Barley	cytosol	3.23	3.3

Protein Annotations

Gene3D:3.90.930.12	MapMan:35.1	EMBL:ACUP02007070	EnsemblPlantsGene:GLYMA_11G205700	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	InterPro:IPR036789	UniProt:K7LRB7	EnsemblPlants:KRH30764	ProteinID:KRH30764	ProteinID:KRH30764.1
ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF23	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom_sf
SUPFAM:SSF56053	UniParc:UPI0002957507	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:28902611..28903709

Molecular Weight (calculated)

10444.8 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.069

Length

93 amino acids

Sequence
(BLAST)

1: MFNYYVGGTI AEVLEGGTSI GNNNKSIEIR NYVDEKKVRK VEMLDGVSVV RSEKALTICL FVCLLQKCHV KNKGIRKFLD GIYVSEKGTI LEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.