Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 94.82 | 94.82 |
| PGSC0003DMT400064920 | Potato | cytosol | 92.23 | 91.75 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 91.71 | 91.24 |
| Solyc12g096700.1.1 | Tomato | nucleus | 91.19 | 90.72 |
| KRH64280 | Soybean | nucleus | 90.16 | 90.62 |
| PGSC0003DMT400075242 | Potato | cytosol | 86.01 | 89.73 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 89.64 | 89.18 |
| KRH53656 | Soybean | cytosol | 88.08 | 88.54 |
| KRH53659 | Soybean | nucleus | 88.08 | 88.54 |
| KRH53658 | Soybean | cytosol | 88.08 | 88.54 |
| PGSC0003DMT400069184 | Potato | cytosol | 83.94 | 87.57 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 45.08 | 87.0 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 45.08 | 87.0 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 44.56 | 86.87 |
| CDX87811 | Canola | cytosol, extracellular | 84.97 | 84.54 |
| CDX93796 | Canola | cytosol | 84.97 | 84.54 |
| Bra039999.1-P | Field mustard | cytosol | 84.97 | 84.54 |
| CDY14882 | Canola | cytosol | 84.46 | 84.02 |
| CDY32946 | Canola | cytosol, extracellular | 84.46 | 84.02 |
| Bra035980.1-P | Field mustard | cytosol | 84.46 | 84.02 |
| EER89049 | Sorghum | cytosol | 82.38 | 83.68 |
| CDX99541 | Canola | cytosol | 84.46 | 83.59 |
| CDX86863 | Canola | cytosol | 84.46 | 83.59 |
| CDY25258 | Canola | cytosol, plasma membrane | 83.94 | 83.51 |
| CDX96888 | Canola | cytosol | 83.94 | 83.51 |
| Bra037917.1-P | Field mustard | cytosol | 83.94 | 83.51 |
| Bra033171.1-P | Field mustard | cytosol | 83.94 | 83.51 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 81.87 | 83.16 |
| Zm00001d035902_P001 | Maize | cytosol | 81.87 | 83.16 |
| AT1G33140.1 | Thale cress | cytosol | 83.42 | 82.99 |
| AT1G33120.1 | Thale cress | cytosol | 83.42 | 82.99 |
| CDX94253 | Canola | cytosol | 83.42 | 82.99 |
| CDY43615 | Canola | cytosol | 72.02 | 82.74 |
| Zm00001d045578_P001 | Maize | plastid | 81.35 | 82.63 |
| Zm00001d045577_P003 | Maize | cytosol | 81.35 | 82.63 |
| Os09t0485900-01 | Rice | cytosol | 81.35 | 82.63 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 80.83 | 82.54 |
| AT4G10450.1 | Thale cress | cytosol | 82.9 | 82.47 |
| OQU84143 | Sorghum | cytosol | 60.62 | 82.39 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 80.31 | 82.01 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 80.31 | 82.01 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 80.31 | 82.01 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 80.31 | 82.01 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 80.31 | 82.01 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 80.31 | 82.01 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 80.31 | 82.01 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 79.79 | 81.48 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 79.79 | 81.48 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 79.27 | 80.53 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 74.09 | 76.47 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 34.2 | 72.53 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 80.31 | 70.78 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 33.16 | 70.33 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 19.17 | 69.81 |
| CDY07742 | Canola | cytosol | 21.24 | 68.33 |
| Bra000049.1-P | Field mustard | cytosol | 21.24 | 68.33 |
| Solyc06g034380.1.1 | Tomato | cytosol | 45.6 | 66.67 |
| HORVU3Hr1G001140.5 | Barley | plastid | 80.31 | 66.24 |
| Solyc12g017290.1.1 | Tomato | cytosol | 43.52 | 65.12 |
| KRH30764 | Soybean | cytosol | 30.57 | 63.44 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 80.31 | 58.49 |
Protein Annotations
| EntrezGene:100252127 | wikigene:100252127 | MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | ProteinID:CCB48106 | ProteinID:CCB48106.1 |
| UniProt:F6H792 | EMBL:FN595247 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 | InterPro:IPR036789 |
| EntrezGene:LOC100252127 | wikigene:LOC100252127 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 | PANTHER:PTHR11655 |
| PANTHER:PTHR11655:SF24 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 |
| TIGR:TC53621 | UniParc:UPI00015CB45D | ArrayExpress:VIT_16s0098g00730 | EnsemblPlantsGene:VIT_16s0098g00730 | EnsemblPlants:VIT_16s0098g00730.t01 | unigene:Vvi.6773 |
| RefSeq:XP_002268859 | RefSeq:XP_002268859.1 | RefSeq:XP_002268859.3 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr16:-:21090037..21092621
Molecular Weight (calculated)
21897.7 Da
IEP (calculated)
10.338
GRAVY (calculated)
-0.416
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILSSETM DIPEGVKIKV KAKIIEVEGP RGKLSRNFKH LNLDFQLIKD ESGNRKLKID AWFGSRKTTA AIRTALSHVE NLITGVTKGY RYKMRFVYAH
101: FPINASITNS NKSIEIRNFL GEKKVRKVDM LDGVSVVRSE KVKDELVLDG NDIELVSRSA ALINQKCHVK KKDIRKFLDG IYVSEKGTMA EEE
101: FPINASITNS NKSIEIRNFL GEKKVRKVDM LDGVSVVRSE KVKDELVLDG NDIELVSRSA ALINQKCHVK KKDIRKFLDG IYVSEKGTMA EEE
001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE
Arabidopsis Description
RPL9D60S ribosomal protein L9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.