Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
| AT1G33140.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87811 | Canola | cytosol, extracellular | 100.0 | 100.0 |
| CDX93796 | Canola | cytosol | 100.0 | 100.0 |
| Bra035980.1-P | Field mustard | cytosol | 96.91 | 96.91 |
| AT1G33140.1 | Thale cress | cytosol | 95.88 | 95.88 |
| AT1G33120.1 | Thale cress | cytosol | 95.88 | 95.88 |
| Bra033171.1-P | Field mustard | cytosol | 89.69 | 89.69 |
| Bra037917.1-P | Field mustard | cytosol | 89.69 | 89.69 |
| KRH53656 | Soybean | cytosol | 87.11 | 88.02 |
| KRH53659 | Soybean | nucleus | 87.11 | 88.02 |
| KRH53658 | Soybean | cytosol | 87.11 | 88.02 |
| KRH64280 | Soybean | nucleus | 86.08 | 86.98 |
| PGSC0003DMT400064920 | Potato | cytosol | 86.6 | 86.6 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 86.08 | 86.08 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 86.08 | 86.08 |
| PGSC0003DMT400069184 | Potato | cytosol | 81.44 | 85.41 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 84.54 | 84.97 |
| Solyc12g096700.1.1 | Tomato | nucleus | 84.54 | 84.54 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 84.02 | 84.46 |
| PGSC0003DMT400075242 | Potato | cytosol | 80.41 | 84.32 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 41.75 | 81.82 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 41.24 | 80.0 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 77.84 | 79.89 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 77.32 | 79.37 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 77.32 | 79.37 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 77.32 | 79.37 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 77.32 | 79.37 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 77.32 | 79.37 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 77.32 | 79.37 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 40.72 | 79.0 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 76.8 | 78.84 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 76.8 | 78.84 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 76.8 | 78.84 |
| OQU84143 | Sorghum | cytosol | 56.7 | 77.46 |
| EER89049 | Sorghum | cytosol | 75.77 | 77.37 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 75.26 | 76.84 |
| Zm00001d035902_P001 | Maize | cytosol | 75.26 | 76.84 |
| Zm00001d045578_P001 | Maize | plastid | 74.74 | 76.32 |
| Os09t0485900-01 | Rice | cytosol | 74.74 | 76.32 |
| Zm00001d045577_P003 | Maize | cytosol | 74.74 | 76.32 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 74.23 | 75.79 |
| Bra000049.1-P | Field mustard | cytosol | 22.68 | 73.33 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 70.1 | 72.73 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 19.59 | 71.7 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 77.32 | 68.49 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 31.96 | 68.13 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 30.93 | 65.93 |
| HORVU3Hr1G001140.5 | Barley | plastid | 77.32 | 64.1 |
| Solyc06g034380.1.1 | Tomato | cytosol | 41.75 | 61.36 |
| KRH30764 | Soybean | cytosol | 29.38 | 61.29 |
| Solyc12g017290.1.1 | Tomato | cytosol | 39.18 | 58.91 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 77.32 | 56.6 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | EnsemblPlantsGene:Bra039999 | EnsemblPlants:Bra039999.1 | EnsemblPlants:Bra039999.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | InterPro:IPR036789 |
| UniProt:M4FFX5 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF23 |
| InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 | UniParc:UPI000253EB32 |
Description
AT1G33120 (E=9e-103) | 60S ribosomal protein L9 (RPL90B)
Coordinates
chrScaffold000185:-:11924..13094
Molecular Weight (calculated)
22036.9 Da
IEP (calculated)
10.154
GRAVY (calculated)
-0.340
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILSSETM DIPESVSIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD AETGKRKLKI DSWFGSRKSS ASIRTALSHV DNLITGVTRG FRYKMRFVYA
101: HFPINASIGG DSKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DSKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.