Factsheet for PGSC0003DMT400075242

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	PGSC0003DMT400015729	AT5G35750.1	18642946
AT1G33140.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096700.1.1	Tomato	nucleus	99.46	94.85
PGSC0003DMT400069184	Potato	cytosol	93.51	93.51
PGSC0003DMT400064920	Potato	cytosol	95.68	91.24
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	47.03	87.0
VIT_09s0002g01620.t01	Wine grape	cytosol	90.27	86.53
VIT_16s0098g00730.t01	Wine grape	cytosol	89.73	86.01
GSMUA_Achr2P00380_001	Banana	cytosol	45.95	85.86
GSMUA_Achr5P20390_001	Banana	cytosol	45.95	85.0
KRH64280	Soybean	nucleus	86.49	83.33
KRH53656	Soybean	cytosol	84.32	81.25
KRH53658	Soybean	cytosol	84.32	81.25
KRH53659	Soybean	nucleus	84.32	81.25
AT1G33140.1	Thale cress	cytosol	84.86	80.93
AT1G33120.1	Thale cress	cytosol	84.86	80.93
CDY32946	Canola	cytosol, extracellular	84.86	80.93
CDX86863	Canola	cytosol	84.86	80.51
CDX99541	Canola	cytosol	84.86	80.51
CDY14882	Canola	cytosol	84.32	80.41
CDX96888	Canola	cytosol	84.32	80.41
CDX93796	Canola	cytosol	84.32	80.41
CDX87811	Canola	cytosol, extracellular	84.32	80.41
Bra039999.1-P	Field mustard	cytosol	84.32	80.41
Bra037917.1-P	Field mustard	cytosol	84.32	80.41
Bra035980.1-P	Field mustard	cytosol	84.32	80.41
CDY25258	Canola	cytosol, plasma membrane	83.78	79.9
CDX94253	Canola	cytosol	83.78	79.9
Bra033171.1-P	Field mustard	cytosol	83.78	79.9
OQU84143	Sorghum	cytosol	61.08	79.58
AT4G10450.1	Thale cress	cytosol	82.16	78.35
CDY43615	Canola	cytosol	70.81	77.98
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	78.92	77.25
EER89049	Sorghum	cytosol	78.92	76.84
TraesCS3A01G007300.1	Wheat	cytosol	78.38	76.72
TraesCS3B01G006500.1	Wheat	cytosol	78.38	76.72
TraesCS3B01G011300.1	Wheat	cytosol	78.38	76.72
TraesCS3B01G011900.1	Wheat	cytosol	78.38	76.72
TraesCS7A01G020200.1	Wheat	cytosol	78.38	76.72
HORVU7Hr1G002060.1	Barley	cytosol	78.38	76.72
Zm00001d035901_P001	Maize	plasma membrane, plastid	78.38	76.32
Zm00001d035902_P001	Maize	cytosol	78.38	76.32
TraesCS4A01G472200.1	Wheat	cytosol	77.84	76.19
TraesCS3D01G003800.1	Wheat	cytosol	77.84	76.19
TraesCS3D01G003200.1	Wheat	cytosol	77.84	76.19
Os09t0485900-01	Rice	cytosol	77.84	75.79
Zm00001d045577_P003	Maize	cytosol	77.3	75.26
Zm00001d045578_P001	Maize	plastid	77.3	75.26
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	76.76	74.74
Solyc06g034380.1.1	Tomato	cytosol	51.35	71.97
HORVU0Hr1G006040.1	Barley	cytosol	20.54	71.7
KRH64273	Soybean	endoplasmic reticulum, nucleus	69.73	68.98
Solyc12g017290.1.1	Tomato	cytosol	47.57	68.22
HORVU0Hr1G006020.2	Barley	cytosol, plastid	78.38	66.21
KRH30764	Soybean	cytosol	31.35	62.37
HORVU3Hr1G001140.5	Barley	plastid	78.38	61.97
HORVU7Hr1G043940.1	Barley	cytosol	28.65	58.24
HORVU2Hr1G058720.1	Barley	cytosol	28.11	57.14
TraesCS7D01G016500.2	Wheat	nucleus	78.38	54.72
CDY07742	Canola	cytosol	17.3	53.33
Bra000049.1-P	Field mustard	cytosol	17.3	53.33

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	InterPro:IPR036789	UniProt:M1CUT3	PFAM:PF00347	EnsemblPlantsGene:PGSC0003DMG400029266
PGSC:PGSC0003DMG400029266	EnsemblPlants:PGSC0003DMT400075242	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI000295069C

Description

60S ribosomal protein L9 [Source:PGSC_GENE;Acc:PGSC0003DMG400029266]

Coordinates

chr12:-:58283139..58285470

Molecular Weight (calculated)

21002.6 Da

IEP (calculated)

10.279

GRAVY (calculated)

-0.420

Length

185 amino acids

Sequence
(BLAST)

001: MDIPDGITIK VKAKLIEIEG PRGKLTRNFK HLNLDFQLIK DEETGKKKLK IDAWFSSRKA TASIRTALSH VENLITGVTK GYRYKMRFVY AHFPINASIT
101: GGNKSIEIRN FLGEKKVRKV DMLDGVTVVR SEKVKDELVL DGNDIELVSR SAALINQKCH VKNKDIRKFL DGIYVSEKGR IAEEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.