Factsheet for Solyc06g034380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT1G33140.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017290.1.1	Tomato	cytosol	63.64	65.12
PGSC0003DMT400075242	Potato	cytosol	71.97	51.35
Solyc12g096700.1.1	Tomato	nucleus	72.73	49.48
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	37.12	49.0
GSMUA_Achr2P00380_001	Banana	cytosol	36.36	48.48
GSMUA_Achr5P20390_001	Banana	cytosol	36.36	48.0
Solyc06g073310.2.1	Tomato	nucleus, plastid	70.45	47.94
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	70.45	47.94
VIT_16s0098g00730.t01	Wine grape	cytosol	66.67	45.6
VIT_09s0002g01620.t01	Wine grape	cytosol	65.91	45.08
OQU84143	Sorghum	cytosol	48.48	45.07
KRH64280	Soybean	nucleus	64.39	44.27
KRH53656	Soybean	cytosol	63.64	43.75
KRH53658	Soybean	cytosol	63.64	43.75
KRH53659	Soybean	nucleus	63.64	43.75
CDY43615	Canola	cytosol	54.55	42.86
CDY25258	Canola	cytosol, plasma membrane	61.36	41.75
CDY32946	Canola	cytosol, extracellular	61.36	41.75
CDY14882	Canola	cytosol	61.36	41.75
CDX94253	Canola	cytosol	61.36	41.75
CDX93796	Canola	cytosol	61.36	41.75
CDX87811	Canola	cytosol, extracellular	61.36	41.75
Bra039999.1-P	Field mustard	cytosol	61.36	41.75
Bra037917.1-P	Field mustard	cytosol	61.36	41.75
Bra035980.1-P	Field mustard	cytosol	61.36	41.75
Bra033171.1-P	Field mustard	cytosol	61.36	41.75
CDX99541	Canola	cytosol	61.36	41.54
CDX86863	Canola	cytosol	61.36	41.54
AT1G33140.1	Thale cress	cytosol	60.61	41.24
CDX96888	Canola	cytosol	60.61	41.24
AT1G33120.1	Thale cress	cytosol	60.61	41.24
Zm00001d035901_P001	Maize	plasma membrane, plastid	59.09	41.05
Zm00001d035902_P001	Maize	cytosol	59.09	41.05
EER89049	Sorghum	cytosol	59.09	41.05
Zm00001d045577_P003	Maize	cytosol	59.09	41.05
Zm00001d045578_P001	Maize	plastid	59.09	41.05
TraesCS3B01G011300.1	Wheat	cytosol	58.33	40.74
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	58.33	40.74
TraesCS3D01G003200.1	Wheat	cytosol	57.58	40.21
TraesCS4A01G472200.1	Wheat	cytosol	57.58	40.21
TraesCS7A01G020200.1	Wheat	cytosol	57.58	40.21
TraesCS3B01G011900.1	Wheat	cytosol	57.58	40.21
TraesCS3A01G007300.1	Wheat	cytosol	57.58	40.21
TraesCS3B01G006500.1	Wheat	cytosol	57.58	40.21
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	57.58	40.0
Os09t0485900-01	Rice	cytosol	57.58	40.0
AT4G10450.1	Thale cress	cytosol	58.33	39.69
TraesCS3D01G003800.1	Wheat	cytosol	56.82	39.68
HORVU7Hr1G002060.1	Barley	cytosol	56.82	39.68
HORVU0Hr1G006040.1	Barley	cytosol	15.91	39.62
KRH64273	Soybean	endoplasmic reticulum, nucleus	56.06	39.57
KRH30764	Soybean	cytosol	27.27	38.71
HORVU0Hr1G006020.2	Barley	cytosol, plastid	56.82	34.25
HORVU3Hr1G001140.5	Barley	plastid	56.82	32.05
TraesCS7D01G016500.2	Wheat	nucleus	57.58	28.68
HORVU7Hr1G043940.1	Barley	cytosol	17.42	25.27
HORVU2Hr1G058720.1	Barley	cytosol	16.67	24.18
CDY07742	Canola	cytosol	6.06	13.33
Bra000049.1-P	Field mustard	cytosol	6.06	13.33

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789
UniProt:K4C4Q9	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
EnsemblPlantsGene:Solyc06g034380.1	EnsemblPlants:Solyc06g034380.1.1	UniParc:UPI0002765B5C	:	:	:

Description

No Description!

Coordinates

chr6:-:24201838..24202312

Molecular Weight (calculated)

15216.9 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.133

Length

132 amino acids

Sequence
(BLAST)

001: MNIPNRITIK VKANLIEIEG PRGKLNSRKA TAAIRTTLSH VKNLIIGIAK RYRYKMCFVY AHFLINYFIT GGNKSIEICD FLGEKKVRKV DMLDGVTVVH
101: SEKVKDELVW MEMTLNIEDI YVTEKGRIVE EK

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.