Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014297_P006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045578_P001 | Maize | plastid | 100.0 | 100.0 |
| Zm00001d035902_P001 | Maize | cytosol | 98.95 | 98.95 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 98.95 | 98.95 |
| EER89049 | Sorghum | cytosol | 98.42 | 98.42 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 92.63 | 92.63 |
| Os09t0485900-01 | Rice | cytosol | 91.58 | 91.58 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 47.37 | 90.0 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 46.32 | 88.0 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 87.37 | 87.83 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 86.84 | 87.3 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 86.32 | 86.77 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 44.21 | 84.85 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 82.63 | 81.35 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 82.11 | 80.83 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 38.42 | 80.22 |
| PGSC0003DMT400064920 | Potato | cytosol | 81.05 | 79.38 |
| KRH64280 | Soybean | nucleus | 80.0 | 79.17 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 80.53 | 78.87 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 80.0 | 78.35 |
| Solyc12g096700.1.1 | Tomato | nucleus | 80.0 | 78.35 |
| PGSC0003DMT400069184 | Potato | cytosol | 75.79 | 77.84 |
| PGSC0003DMT400075242 | Potato | cytosol | 75.26 | 77.3 |
| KRH53656 | Soybean | cytosol | 77.37 | 76.56 |
| KRH53659 | Soybean | nucleus | 77.37 | 76.56 |
| KRH53658 | Soybean | cytosol | 77.37 | 76.56 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 36.32 | 75.82 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 87.37 | 75.8 |
| Bra033171.1-P | Field mustard | cytosol | 77.37 | 75.77 |
| Bra037917.1-P | Field mustard | cytosol | 77.37 | 75.77 |
| CDY25258 | Canola | cytosol, plasma membrane | 77.37 | 75.77 |
| CDX86863 | Canola | cytosol | 77.37 | 75.38 |
| CDX99541 | Canola | cytosol | 77.37 | 75.38 |
| CDX94253 | Canola | cytosol | 76.84 | 75.26 |
| AT1G33140.1 | Thale cress | cytosol | 76.32 | 74.74 |
| AT4G10450.1 | Thale cress | cytosol | 76.32 | 74.74 |
| Bra035980.1-P | Field mustard | cytosol | 76.32 | 74.74 |
| Bra039999.1-P | Field mustard | cytosol | 76.32 | 74.74 |
| CDX87811 | Canola | cytosol, extracellular | 76.32 | 74.74 |
| CDX93796 | Canola | cytosol | 76.32 | 74.74 |
| CDX96888 | Canola | cytosol | 76.32 | 74.74 |
| CDY14882 | Canola | cytosol | 76.32 | 74.74 |
| AT1G33120.1 | Thale cress | cytosol | 76.32 | 74.74 |
| CDY32946 | Canola | cytosol, extracellular | 75.79 | 74.23 |
| CDY43615 | Canola | cytosol | 65.26 | 73.81 |
| HORVU3Hr1G001140.5 | Barley | plastid | 87.37 | 70.94 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 66.84 | 67.91 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 86.84 | 62.26 |
| Solyc06g034380.1.1 | Tomato | cytosol | 41.05 | 59.09 |
| Solyc12g017290.1.1 | Tomato | cytosol | 38.95 | 57.36 |
| CDY07742 | Canola | cytosol | 17.89 | 56.67 |
| Bra000049.1-P | Field mustard | cytosol | 17.89 | 56.67 |
| KRH30764 | Soybean | cytosol | 27.37 | 55.91 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | ProteinID:AQL02650.1 | ProteinID:AQL02653.1 | EMBL:BT088152 | UniProt:C4JBF5 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 |
| InterPro:IPR036789 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF24 |
| InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 | UniParc:UPI0001A4C84A |
| EnsemblPlantsGene:Zm00001d045577 | EnsemblPlants:Zm00001d045577_P003 | EnsemblPlants:Zm00001d045577_T003 | : | : | : |
Description
60S ribosomal protein L9-1
Coordinates
chr9:+:27179019..27181458
Molecular Weight (calculated)
21506.4 Da
IEP (calculated)
10.363
GRAVY (calculated)
-0.255
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILASETM DIPEGVMVTV AAKLVTVEGP RGKLTRNFKH LNLDFQLQEA GRKLKVDAWF GTRRTMAAIR TAISHVQNLI KGVTKGYRYK MRFVYAHFPI
101: NASITNSNTA IEIRNFLGEK KVRKVDMLDG VTILRSEKVK DELILDGNDV ELVSRSAALI NQKCHVKKKD IRKFLDGIYV SDKGVIEEEQ
101: NASITNSNTA IEIRNFLGEK KVRKVDMLDG VTILRSEKVK DELILDGNDV ELVSRSAALI NQKCHVKKKD IRKFLDGIYV SDKGVIEEEQ
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.