Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014297_P006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035902_P001 | Maize | cytosol | 93.68 | 93.68 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 93.68 | 93.68 |
| OQU84143 | Sorghum | cytosol | 69.47 | 92.96 |
| Zm00001d045578_P001 | Maize | plastid | 92.63 | 92.63 |
| Zm00001d045577_P003 | Maize | cytosol | 92.63 | 92.63 |
| Os09t0485900-01 | Rice | cytosol | 90.0 | 90.0 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 46.84 | 89.0 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 88.42 | 88.89 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 86.84 | 87.3 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 86.84 | 87.3 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 86.32 | 86.77 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 86.32 | 86.77 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 45.26 | 86.0 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 43.68 | 83.84 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 40.0 | 83.52 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 38.42 | 80.22 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 80.53 | 79.27 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 80.53 | 79.27 |
| PGSC0003DMT400064920 | Potato | cytosol | 80.0 | 78.35 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 79.47 | 77.84 |
| Solyc12g096700.1.1 | Tomato | nucleus | 78.95 | 77.32 |
| Bra037917.1-P | Field mustard | cytosol | 78.95 | 77.32 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 78.95 | 77.32 |
| PGSC0003DMT400069184 | Potato | cytosol | 75.26 | 77.3 |
| KRH64280 | Soybean | nucleus | 77.89 | 77.08 |
| CDX86863 | Canola | cytosol | 78.95 | 76.92 |
| CDX99541 | Canola | cytosol | 78.95 | 76.92 |
| CDY25258 | Canola | cytosol, plasma membrane | 78.42 | 76.8 |
| Bra033171.1-P | Field mustard | cytosol | 78.42 | 76.8 |
| PGSC0003DMT400075242 | Potato | cytosol | 74.74 | 76.76 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 88.42 | 76.71 |
| CDX94253 | Canola | cytosol | 77.89 | 76.29 |
| KRH53658 | Soybean | cytosol | 76.84 | 76.04 |
| KRH53659 | Soybean | nucleus | 76.84 | 76.04 |
| KRH53656 | Soybean | cytosol | 76.84 | 76.04 |
| AT4G10450.1 | Thale cress | cytosol | 76.84 | 75.26 |
| AT1G33140.1 | Thale cress | cytosol | 76.32 | 74.74 |
| AT1G33120.1 | Thale cress | cytosol | 76.32 | 74.74 |
| CDY14882 | Canola | cytosol | 75.79 | 74.23 |
| Bra035980.1-P | Field mustard | cytosol | 75.79 | 74.23 |
| Bra039999.1-P | Field mustard | cytosol | 75.79 | 74.23 |
| CDX87811 | Canola | cytosol, extracellular | 75.79 | 74.23 |
| CDX93796 | Canola | cytosol | 75.79 | 74.23 |
| CDX96888 | Canola | cytosol | 75.79 | 74.23 |
| CDY32946 | Canola | cytosol, extracellular | 75.26 | 73.71 |
| CDY43615 | Canola | cytosol | 64.74 | 73.21 |
| HORVU3Hr1G001140.5 | Barley | plastid | 88.42 | 71.79 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 65.79 | 66.84 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 86.84 | 62.26 |
| Solyc06g034380.1.1 | Tomato | cytosol | 40.0 | 57.58 |
| Solyc12g017290.1.1 | Tomato | cytosol | 38.95 | 57.36 |
| CDY07742 | Canola | cytosol | 17.89 | 56.67 |
| Bra000049.1-P | Field mustard | cytosol | 17.89 | 56.67 |
| KRH30764 | Soybean | cytosol | 26.84 | 54.84 |
Protein Annotations
| EntrezGene:100283325 | MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | ProteinID:AQK61238.1 | UniProt:B6TH42 | EMBL:BT060868 |
| EMBL:BT065122 | EMBL:EU964307 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019843 | InterPro:IPR036789 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 |
| PANTHER:PTHR11655 | PANTHER:PTHR11655:SF24 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf |
| SUPFAM:SSF56053 | UniParc:UPI000182D30F | EnsemblPlantsGene:Zm00001d054084 | EnsemblPlants:Zm00001d054084_P001 | EnsemblPlants:Zm00001d054084_T001 | SEG:seg |
Description
60S ribosomal protein L9-1
Coordinates
chr4:+:246124963..246127627
Molecular Weight (calculated)
21375.2 Da
IEP (calculated)
10.447
GRAVY (calculated)
-0.214
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILATETM DIPEGVTVTV AAKLVTVEGP RGKLTRNFKH LNLDFQLQDG GRKLKVDAWF GTRRTMAAIR TAISHVQNLI AGVTKGFRYK MRFVYAHFPI
101: NASITNANSA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLEGNDV ELVSRSAALI NQKCHVKKKD IRKFLDGIYV SDKGPIFDEQ
101: NASITNANSA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLEGNDV ELVSRSAALI NQKCHVKKKD IRKFLDGIYV SDKGPIFDEQ
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.