Factsheet for GSMUA_Achr11P21410_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G33120.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G33120.1	GSMUA_AchrUn_...	AT5G35750.1	18642946
AT1G33140.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G33140.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G33140.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20390_001	Banana	cytosol	92.0	92.0
GSMUA_Achr2P00380_001	Banana	cytosol	86.0	86.87
HORVU0Hr1G006040.1	Barley	cytosol	39.0	73.58
OQU84143	Sorghum	cytosol	88.0	61.97
KRH30764	Soybean	cytosol	49.0	52.69
CDY43615	Canola	cytosol	80.0	47.62
Zm00001d045578_P001	Maize	plastid	90.0	47.37
Zm00001d045577_P003	Maize	cytosol	90.0	47.37
Zm00001d035902_P001	Maize	cytosol	90.0	47.37
Zm00001d035901_P001	Maize	plasma membrane, plastid	90.0	47.37
Os09t0485900-01	Rice	cytosol	90.0	47.37
PGSC0003DMT400075242	Potato	cytosol	87.0	47.03
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	89.0	46.84
EER89049	Sorghum	cytosol	89.0	46.84
VIT_09s0002g01620.t01	Wine grape	cytosol	90.0	46.63
PGSC0003DMT400069184	Potato	cytosol	86.0	46.49
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	87.0	46.03
TraesCS3B01G006500.1	Wheat	cytosol	87.0	46.03
TraesCS3A01G007300.1	Wheat	cytosol	87.0	46.03
TraesCS3B01G011300.1	Wheat	cytosol	87.0	46.03
TraesCS3B01G011900.1	Wheat	cytosol	87.0	46.03
TraesCS3D01G003200.1	Wheat	cytosol	87.0	46.03
TraesCS4A01G472200.1	Wheat	cytosol	87.0	46.03
TraesCS7A01G020200.1	Wheat	cytosol	87.0	46.03
TraesCS3D01G003800.1	Wheat	cytosol	86.0	45.5
VIT_16s0098g00730.t01	Wine grape	cytosol	87.0	45.08
Solyc12g096700.1.1	Tomato	nucleus	87.0	44.85
Solyc06g073310.2.1	Tomato	nucleus, plastid	86.0	44.33
KRH64280	Soybean	nucleus	85.0	44.27
PGSC0003DMT400064920	Potato	cytosol	85.0	43.81
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	85.0	43.81
KRH53659	Soybean	nucleus	84.0	43.75
KRH53658	Soybean	cytosol	84.0	43.75
KRH53656	Soybean	cytosol	84.0	43.75
CDX94253	Canola	cytosol	82.0	42.27
Bra033171.1-P	Field mustard	cytosol	82.0	42.27
CDY25258	Canola	cytosol, plasma membrane	82.0	42.27
Bra037917.1-P	Field mustard	cytosol	82.0	42.27
CDX86863	Canola	cytosol	82.0	42.05
CDX99541	Canola	cytosol	82.0	42.05
CDX87811	Canola	cytosol, extracellular	80.0	41.24
AT1G33140.1	Thale cress	cytosol	80.0	41.24
Bra039999.1-P	Field mustard	cytosol	80.0	41.24
Bra035980.1-P	Field mustard	cytosol	80.0	41.24
AT4G10450.1	Thale cress	cytosol	80.0	41.24
AT1G33120.1	Thale cress	cytosol	80.0	41.24
CDX93796	Canola	cytosol	80.0	41.24
CDX96888	Canola	cytosol	80.0	41.24
CDY14882	Canola	cytosol	80.0	41.24
CDY32946	Canola	cytosol, extracellular	80.0	41.24
Solyc06g034380.1.1	Tomato	cytosol	49.0	37.12
TraesCS7D01G016500.2	Wheat	nucleus	87.0	32.83
KRH64273	Soybean	endoplasmic reticulum, nucleus	59.0	31.55
Solyc12g017290.1.1	Tomato	cytosol	38.0	29.46
CDY07742	Canola	cytosol	0.0	0.0
Bra000049.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	EnsemblPlantsGene:GSMUA_Achr11G21410_001	EnsemblPlants:GSMUA_Achr11P21410_001	EnsemblPlants:GSMUA_Achr11T21410_001	InterPro:IPR036789
UniProt:M0RU71	PFAM:PF00347	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI000296DE17	:

Description

60S ribosomal protein L9 [Source:GMGC_GENE;Acc:GSMUA_Achr11G21410_001]

Coordinates

chr11:-:22040915..22044218

Molecular Weight (calculated)

11347.8 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.280

Length

100 amino acids

Sequence
(BLAST)

1: MRLVYAHFPI NASITNSNSC IEIRNFLGEK KVRKVDMLNG VTILRSEKVK DELVLDGNDV ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SERGTIAEEQ

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.