Factsheet for Solyc08g014550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT1G33140.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064920	Potato	cytosol	99.48	99.48
Solyc12g096700.1.1	Tomato	nucleus	96.91	96.91
Solyc06g073310.2.1	Tomato	nucleus, plastid	95.36	95.36
VIT_09s0002g01620.t01	Wine grape	cytosol	91.75	92.23
VIT_16s0098g00730.t01	Wine grape	cytosol	91.24	91.71
KRH64280	Soybean	nucleus	88.66	89.58
KRH53659	Soybean	nucleus	87.11	88.02
KRH53658	Soybean	cytosol	87.11	88.02
KRH53656	Soybean	cytosol	87.11	88.02
AT1G33140.1	Thale cress	cytosol	87.11	87.11
AT1G33120.1	Thale cress	cytosol	87.11	87.11
CDY32946	Canola	cytosol, extracellular	86.6	86.6
CDX96888	Canola	cytosol	86.08	86.08
CDY14882	Canola	cytosol	86.08	86.08
CDX87811	Canola	cytosol, extracellular	86.08	86.08
Bra039999.1-P	Field mustard	cytosol	86.08	86.08
Bra035980.1-P	Field mustard	cytosol	86.08	86.08
CDX93796	Canola	cytosol	86.08	86.08
GSMUA_Achr2P00380_001	Banana	cytosol	43.81	85.86
CDX86863	Canola	cytosol	85.57	85.13
CDX99541	Canola	cytosol	85.57	85.13
Bra037917.1-P	Field mustard	cytosol	85.05	85.05
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	43.81	85.0
Bra033171.1-P	Field mustard	cytosol	84.54	84.54
CDY25258	Canola	cytosol, plasma membrane	84.54	84.54
CDX94253	Canola	cytosol	84.54	84.54
GSMUA_Achr5P20390_001	Banana	cytosol	43.3	84.0
CDY43615	Canola	cytosol	72.68	83.93
AT4G10450.1	Thale cress	cytosol	83.51	83.51
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	80.93	83.07
TraesCS3A01G007300.1	Wheat	cytosol	80.41	82.54
TraesCS3B01G006500.1	Wheat	cytosol	80.41	82.54
TraesCS3B01G011300.1	Wheat	cytosol	80.41	82.54
TraesCS3B01G011900.1	Wheat	cytosol	80.41	82.54
TraesCS7A01G020200.1	Wheat	cytosol	80.41	82.54
HORVU7Hr1G002060.1	Barley	cytosol	80.41	82.54
EER89049	Sorghum	cytosol	80.41	82.11
TraesCS4A01G472200.1	Wheat	cytosol	79.9	82.01
TraesCS3D01G003800.1	Wheat	cytosol	79.9	82.01
TraesCS3D01G003200.1	Wheat	cytosol	79.9	82.01
Os09t0485900-01	Rice	cytosol	79.9	81.58
Zm00001d035901_P001	Maize	plasma membrane, plastid	79.9	81.58
Zm00001d035902_P001	Maize	cytosol	79.9	81.58
OQU84143	Sorghum	cytosol	59.28	80.99
Zm00001d045577_P003	Maize	cytosol	78.87	80.53
Zm00001d045578_P001	Maize	plastid	78.87	80.53
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	77.84	79.47
KRH64273	Soybean	endoplasmic reticulum, nucleus	72.68	75.4
HORVU0Hr1G006040.1	Barley	cytosol	19.59	71.7
HORVU7Hr1G043940.1	Barley	cytosol	33.51	71.43
HORVU0Hr1G006020.2	Barley	cytosol, plastid	80.41	71.23
Solyc06g034380.1.1	Tomato	cytosol	47.94	70.45
CDY07742	Canola	cytosol	21.65	70.0
Bra000049.1-P	Field mustard	cytosol	21.65	70.0
HORVU2Hr1G058720.1	Barley	cytosol	32.47	69.23
HORVU3Hr1G001140.5	Barley	plastid	80.41	66.67
Solyc12g017290.1.1	Tomato	cytosol	43.81	65.89
KRH30764	Soybean	cytosol	29.9	62.37
TraesCS7D01G016500.2	Wheat	nucleus	80.41	58.87

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789
UniProt:K4CJ85	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF23
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	EnsemblPlantsGene:Solyc08g014550.2
EnsemblPlants:Solyc08g014550.2.1	UniParc:UPI000276B49B	:	:	:	:

Description

No Description!

Coordinates

chr8:+:4742563..4744741

Molecular Weight (calculated)

21992.8 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.426

Length

194 amino acids

Sequence
(BLAST)

001: MKTILSSETM DIPDGITIKV KAKQIEVEGP RGKLTRNFKH LNLDFQLIKD EETGKKKLKI DAWFGSRKTT AAIRTALSHV ENLITGVTKG YRYKMRFVYA
101: HFPINASISG GNKSIEIRNF LGEKKVRKVD MLDGVTVVRS EKVKDELVLD GNDIELVSRS AALINQKCHV KNKDIRKFLD GIYVSEKGRI VEEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.