Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G33120.1 | CDY47297 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32946 | Canola | cytosol, extracellular | 95.83 | 82.99 |
| CDX87811 | Canola | cytosol, extracellular | 95.24 | 82.47 |
| CDX93796 | Canola | cytosol | 95.24 | 82.47 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 48.21 | 81.82 |
| CDX96888 | Canola | cytosol | 94.05 | 81.44 |
| CDY14882 | Canola | cytosol | 94.05 | 81.44 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 47.62 | 80.0 |
| AT1G33140.1 | Thale cress | cytosol | 92.26 | 79.9 |
| AT1G33120.1 | Thale cress | cytosol | 92.26 | 79.9 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 47.02 | 79.0 |
| OQU84143 | Sorghum | cytosol | 64.88 | 76.76 |
| CDX86863 | Canola | cytosol | 86.31 | 74.36 |
| CDX99541 | Canola | cytosol | 86.31 | 74.36 |
| CDY25258 | Canola | cytosol, plasma membrane | 85.71 | 74.23 |
| KRH53659 | Soybean | nucleus | 84.52 | 73.96 |
| KRH53658 | Soybean | cytosol | 84.52 | 73.96 |
| KRH53656 | Soybean | cytosol | 84.52 | 73.96 |
| CDX94253 | Canola | cytosol | 85.12 | 73.71 |
| PGSC0003DMT400064920 | Potato | cytosol | 83.93 | 72.68 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 83.93 | 72.68 |
| KRH64280 | Soybean | nucleus | 82.74 | 72.4 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 83.33 | 72.16 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 82.74 | 72.02 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 82.74 | 72.02 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 22.62 | 71.7 |
| Solyc12g096700.1.1 | Tomato | nucleus | 82.74 | 71.65 |
| PGSC0003DMT400069184 | Potato | cytosol | 77.98 | 70.81 |
| PGSC0003DMT400075242 | Potato | cytosol | 77.98 | 70.81 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 78.57 | 69.84 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 77.98 | 69.31 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 77.98 | 69.31 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 77.98 | 69.31 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 77.98 | 69.31 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 77.98 | 69.31 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 77.98 | 69.31 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 77.38 | 68.78 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 77.38 | 68.78 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 77.38 | 68.78 |
| EER89049 | Sorghum | cytosol | 75.0 | 66.32 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 74.4 | 65.79 |
| Zm00001d035902_P001 | Maize | cytosol | 74.4 | 65.79 |
| Zm00001d045577_P003 | Maize | cytosol | 73.81 | 65.26 |
| Zm00001d045578_P001 | Maize | plastid | 73.81 | 65.26 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 73.21 | 64.74 |
| Os09t0485900-01 | Rice | cytosol | 73.21 | 64.74 |
| KRH30764 | Soybean | cytosol | 33.93 | 61.29 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 77.98 | 59.82 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 64.88 | 58.29 |
| HORVU3Hr1G001140.5 | Barley | plastid | 77.98 | 55.98 |
| Solyc06g034380.1.1 | Tomato | cytosol | 42.86 | 54.55 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 26.79 | 49.45 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 77.98 | 49.43 |
| Solyc12g017290.1.1 | Tomato | cytosol | 36.31 | 47.29 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 25.0 | 46.15 |
| CDY07742 | Canola | cytosol | 15.48 | 43.33 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | GO:A0A078HYK5 | UniProt:A0A078HYK5 | EnsemblPlants:CDY43615 | ProteinID:CDY43615 |
| ProteinID:CDY43615.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019843 | EnsemblPlantsGene:GSBRNA2T00076933001 | InterPro:IPR036789 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 |
| PANTHER:PTHR11655 | PANTHER:PTHR11655:SF23 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf |
| SUPFAM:SSF56053 | UniParc:UPI0004EDCD83 | : | : | : | : |
Description
BnaC09g17540DBnaC09g17540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYK5]
Coordinates
chrLK032562:+:196958..198107
Molecular Weight (calculated)
18894.0 Da
IEP (calculated)
10.212
GRAVY (calculated)
-0.379
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILSSETM DIPGAVNIKV SAKEAETGKR KLKIDSWFGS RKSSASNRTA LSHVDNLITG VTRGFRYKMR FVYAHFPINA SIGGDSKSIE IRNFLGEKKV
101: RKVEMLDGVT IVRSEKVKDE IVLDGNDIEL VSRSCALINQ KCHVKKKDIR KFLDGIYVSE KSKIVEEE
101: RKVEMLDGVT IVRSEKVKDE IVLDGNDIEL VSRSCALINQ KCHVKKKDIR KFLDGIYVSE KSKIVEEE
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.