Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20390_001 | Banana | cytosol | 89.9 | 89.0 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 86.87 | 86.0 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 37.37 | 69.81 |
| OQU84143 | Sorghum | cytosol | 84.85 | 59.15 |
| KRH30764 | Soybean | cytosol | 52.53 | 55.91 |
| CDY43615 | Canola | cytosol | 81.82 | 48.21 |
| PGSC0003DMT400075242 | Potato | cytosol | 85.86 | 45.95 |
| Os09t0485900-01 | Rice | cytosol | 87.88 | 45.79 |
| PGSC0003DMT400069184 | Potato | cytosol | 84.85 | 45.41 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 87.88 | 45.08 |
| EER89049 | Sorghum | cytosol | 85.86 | 44.74 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 86.87 | 44.56 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 84.85 | 44.44 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 84.85 | 44.44 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 84.85 | 44.44 |
| KRH64280 | Soybean | nucleus | 85.86 | 44.27 |
| KRH53659 | Soybean | nucleus | 85.86 | 44.27 |
| KRH53656 | Soybean | cytosol | 85.86 | 44.27 |
| KRH53658 | Soybean | cytosol | 85.86 | 44.27 |
| Zm00001d045578_P001 | Maize | plastid | 84.85 | 44.21 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 84.85 | 44.21 |
| Zm00001d035902_P001 | Maize | cytosol | 84.85 | 44.21 |
| Zm00001d045577_P003 | Maize | cytosol | 84.85 | 44.21 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 85.86 | 43.81 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 85.86 | 43.81 |
| Solyc12g096700.1.1 | Tomato | nucleus | 85.86 | 43.81 |
| PGSC0003DMT400064920 | Potato | cytosol | 85.86 | 43.81 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 83.84 | 43.68 |
| AT4G10450.1 | Thale cress | cytosol | 84.85 | 43.3 |
| CDY25258 | Canola | cytosol, plasma membrane | 84.85 | 43.3 |
| Bra033171.1-P | Field mustard | cytosol | 84.85 | 43.3 |
| Bra037917.1-P | Field mustard | cytosol | 84.85 | 43.3 |
| CDX94253 | Canola | cytosol | 84.85 | 43.3 |
| CDX99541 | Canola | cytosol | 84.85 | 43.08 |
| CDX86863 | Canola | cytosol | 84.85 | 43.08 |
| CDX87811 | Canola | cytosol, extracellular | 81.82 | 41.75 |
| AT1G33120.1 | Thale cress | cytosol | 81.82 | 41.75 |
| AT1G33140.1 | Thale cress | cytosol | 81.82 | 41.75 |
| Bra035980.1-P | Field mustard | cytosol | 81.82 | 41.75 |
| Bra039999.1-P | Field mustard | cytosol | 81.82 | 41.75 |
| CDX93796 | Canola | cytosol | 81.82 | 41.75 |
| CDX96888 | Canola | cytosol | 81.82 | 41.75 |
| CDY14882 | Canola | cytosol | 81.82 | 41.75 |
| CDY32946 | Canola | cytosol, extracellular | 81.82 | 41.75 |
| Solyc06g034380.1.1 | Tomato | cytosol | 48.48 | 36.36 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 84.85 | 31.7 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 58.59 | 31.02 |
| Solyc12g017290.1.1 | Tomato | cytosol | 38.38 | 29.46 |
| CDY07742 | Canola | cytosol | 0.0 | 0.0 |
| Bra000049.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019843 | EnsemblPlantsGene:GSMUA_Achr2G00380_001 | EnsemblPlants:GSMUA_Achr2P00380_001 | EnsemblPlants:GSMUA_Achr2T00380_001 | InterPro:IPR036789 |
| UniProt:M0S3X9 | PFAM:PF00347 | ScanProsite:PS00700 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF23 | InterPro:Ribosomal_L6 |
| InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 | UniParc:UPI000294F9E1 | : |
Description
60S ribosomal protein L9 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00380_001]
Coordinates
chr2:-:2817525..2820668
Molecular Weight (calculated)
11254.7 Da
IEP (calculated)
9.633
GRAVY (calculated)
-0.335
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MRLVYAHFPI NASIPNNNTS IEIRNFLGEK KVRKVGMLDG VRIIRSEKVK DELVLEGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SEKGTVTEE
001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE
Arabidopsis Description
RPL9D60S ribosomal protein L9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.