CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	KRH14106	AT5G35750.1	18642946
AT1G33120.1	KRH74010	AT5G35750.1	18642946
AT1G33140.1	KRH14106	AT5G35750.1	18642946
AT1G33140.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53659	Soybean	nucleus	95.31	95.31
KRH53658	Soybean	cytosol	95.31	95.31
KRH53656	Soybean	cytosol	95.31	95.31
VIT_16s0098g00730.t01	Wine grape	cytosol	90.62	90.16
VIT_09s0002g01620.t01	Wine grape	cytosol	90.1	89.64
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	89.58	88.66
PGSC0003DMT400064920	Potato	cytosol	89.06	88.14
Solyc12g096700.1.1	Tomato	nucleus	88.02	87.11
PGSC0003DMT400075242	Potato	cytosol	83.33	86.49
Solyc06g073310.2.1	Tomato	nucleus, plastid	86.98	86.08
Bra039999.1-P	Field mustard	cytosol	86.98	86.08
CDX87811	Canola	cytosol, extracellular	86.98	86.08
CDX93796	Canola	cytosol	86.98	86.08
CDY32946	Canola	cytosol, extracellular	86.98	86.08
GSMUA_Achr2P00380_001	Banana	cytosol	44.27	85.86
AT1G33140.1	Thale cress	cytosol	85.94	85.05
AT1G33120.1	Thale cress	cytosol	85.94	85.05
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	44.27	85.0
GSMUA_Achr5P20390_001	Banana	cytosol	44.27	85.0
PGSC0003DMT400069184	Potato	cytosol	81.77	84.86
CDX96888	Canola	cytosol	84.9	84.02
CDY14882	Canola	cytosol	84.9	84.02
Bra035980.1-P	Field mustard	cytosol	84.9	84.02
CDX99541	Canola	cytosol	84.9	83.59
CDX86863	Canola	cytosol	84.9	83.59
Bra033171.1-P	Field mustard	cytosol	84.38	83.51
AT4G10450.1	Thale cress	cytosol	84.38	83.51
Bra037917.1-P	Field mustard	cytosol	84.38	83.51
CDY25258	Canola	cytosol, plasma membrane	84.38	83.51
CDX94253	Canola	cytosol	83.85	82.99
CDY43615	Canola	cytosol	72.4	82.74
KRH64273	Soybean	endoplasmic reticulum, nucleus	80.21	82.35
OQU84143	Sorghum	cytosol	60.42	81.69
EER89049	Sorghum	cytosol	80.21	81.05
Os09t0485900-01	Rice	cytosol	80.21	81.05
Zm00001d035901_P001	Maize	plasma membrane, plastid	79.69	80.53
Zm00001d035902_P001	Maize	cytosol	79.69	80.53
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	79.17	80.42
Zm00001d045577_P003	Maize	cytosol	79.17	80.0
Zm00001d045578_P001	Maize	plastid	79.17	80.0
TraesCS7A01G020200.1	Wheat	cytosol	78.65	79.89
TraesCS3A01G007300.1	Wheat	cytosol	78.65	79.89
TraesCS3B01G006500.1	Wheat	cytosol	78.65	79.89
TraesCS3B01G011300.1	Wheat	cytosol	78.65	79.89
TraesCS3B01G011900.1	Wheat	cytosol	78.65	79.89
TraesCS3D01G003800.1	Wheat	cytosol	78.65	79.89
HORVU7Hr1G002060.1	Barley	cytosol	78.12	79.37
TraesCS3D01G003200.1	Wheat	cytosol	78.12	79.37
TraesCS4A01G472200.1	Wheat	cytosol	78.12	79.37
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	77.08	77.89
HORVU7Hr1G043940.1	Barley	cytosol	32.81	69.23
KRH30764	Soybean	cytosol	33.33	68.82
HORVU0Hr1G006020.2	Barley	cytosol, plastid	78.12	68.49
HORVU2Hr1G058720.1	Barley	cytosol	32.29	68.13
HORVU0Hr1G006040.1	Barley	cytosol	18.23	66.04
Solyc06g034380.1.1	Tomato	cytosol	44.27	64.39
HORVU3Hr1G001140.5	Barley	plastid	78.12	64.1
Solyc12g017290.1.1	Tomato	cytosol	42.19	62.79
TraesCS7D01G016500.2	Wheat	nucleus	78.65	56.98

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	EMBL:ACUP02002752	EnsemblPlantsGene:GLYMA_04G226900	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	UniProt:I1JYG3	InterPro:IPR036789	EnsemblPlants:KRH64280	ProteinID:KRH64280	ProteinID:KRH64280.1
PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF23	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI00023BF796	:

Description

hypothetical protein

Coordinates

chr4:+:49654795..49655973

Molecular Weight (calculated)

21746.5 Da

IEP (calculated)

10.138

GRAVY (calculated)

-0.322

Length

192 amino acids

Sequence
(BLAST)

001: MKTILSTETM NIPDGVSIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLITD ENGKRKLKID AWFGSRKTSA AIRTALSHVE NLITGVTKGY RYKMRFVYAH
101: FPINASIGNS NKSIEIRNFL GEKKVRKVDM LDGVSVVRSE KVKDELILDG NDIELVSRSC ALINQKCHVK NKDIRKFLDG IYVSEKGTIL EE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.