Factsheet for Zm00001d035901_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	Zm00001d014297_P006	AT5G35750.1	18642946
AT1G33140.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035902_P001	Maize	cytosol	100.0	100.0
EER89049	Sorghum	cytosol	99.47	99.47
Zm00001d045578_P001	Maize	plastid	98.95	98.95
Zm00001d045577_P003	Maize	cytosol	98.95	98.95
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	93.68	93.68
Os09t0485900-01	Rice	cytosol	92.63	92.63
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	47.37	90.0
HORVU7Hr1G002060.1	Barley	cytosol	88.42	88.89
TraesCS3A01G007300.1	Wheat	cytosol	87.89	88.36
TraesCS3B01G006500.1	Wheat	cytosol	87.89	88.36
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	87.89	88.36
TraesCS3B01G011900.1	Wheat	cytosol	87.89	88.36
TraesCS7A01G020200.1	Wheat	cytosol	87.89	88.36
GSMUA_Achr5P20390_001	Banana	cytosol	46.32	88.0
TraesCS3B01G011300.1	Wheat	cytosol	87.37	87.83
TraesCS3D01G003200.1	Wheat	cytosol	87.37	87.83
TraesCS3D01G003800.1	Wheat	cytosol	87.37	87.83
TraesCS4A01G472200.1	Wheat	cytosol	87.37	87.83
GSMUA_Achr2P00380_001	Banana	cytosol	44.21	84.85
HORVU7Hr1G043940.1	Barley	cytosol	39.47	82.42
VIT_16s0098g00730.t01	Wine grape	cytosol	83.16	81.87
VIT_09s0002g01620.t01	Wine grape	cytosol	82.63	81.35
PGSC0003DMT400064920	Potato	cytosol	82.11	80.41
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	81.58	79.9
KRH64280	Soybean	nucleus	80.53	79.69
Solyc06g073310.2.1	Tomato	nucleus, plastid	81.05	79.38
Solyc12g096700.1.1	Tomato	nucleus	81.05	79.38
PGSC0003DMT400069184	Potato	cytosol	76.84	78.92
PGSC0003DMT400075242	Potato	cytosol	76.32	78.38
HORVU2Hr1G058720.1	Barley	cytosol	37.37	78.02
KRH53656	Soybean	cytosol	77.89	77.08
KRH53659	Soybean	nucleus	77.89	77.08
KRH53658	Soybean	cytosol	77.89	77.08
Bra037917.1-P	Field mustard	cytosol	78.42	76.8
HORVU0Hr1G006020.2	Barley	cytosol, plastid	88.42	76.71
CDX86863	Canola	cytosol	78.42	76.41
CDX99541	Canola	cytosol	78.42	76.41
Bra033171.1-P	Field mustard	cytosol	77.89	76.29
CDY25258	Canola	cytosol, plasma membrane	77.89	76.29
AT1G33140.1	Thale cress	cytosol	77.37	75.77
CDX94253	Canola	cytosol	77.37	75.77
AT1G33120.1	Thale cress	cytosol	77.37	75.77
CDY14882	Canola	cytosol	76.84	75.26
AT4G10450.1	Thale cress	cytosol	76.84	75.26
CDX96888	Canola	cytosol	76.84	75.26
CDX93796	Canola	cytosol	76.84	75.26
CDX87811	Canola	cytosol, extracellular	76.84	75.26
Bra035980.1-P	Field mustard	cytosol	76.84	75.26
Bra039999.1-P	Field mustard	cytosol	76.84	75.26
CDY32946	Canola	cytosol, extracellular	76.32	74.74
CDY43615	Canola	cytosol	65.79	74.4
HORVU3Hr1G001140.5	Barley	plastid	88.42	71.79
KRH64273	Soybean	endoplasmic reticulum, nucleus	67.37	68.45
TraesCS7D01G016500.2	Wheat	nucleus	87.89	63.02
Solyc06g034380.1.1	Tomato	cytosol	41.05	59.09
Bra000049.1-P	Field mustard	cytosol	18.42	58.33
CDY07742	Canola	cytosol	18.42	58.33
Solyc12g017290.1.1	Tomato	cytosol	39.47	58.14
KRH30764	Soybean	cytosol	27.37	55.91

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	ProteinID:AQK79910.1	ProteinID:AQK79911.1	UniProt:B6SI39	EMBL:EU952404
EMBL:EU961784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	InterPro:IPR036789	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655
PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
UniParc:UPI000182B5E9	EnsemblPlantsGene:Zm00001d035901	EnsemblPlants:Zm00001d035901_P001	EnsemblPlants:Zm00001d035901_T001	SEG:seg	:

Description

60S ribosomal protein L9-1

Coordinates

chr6:-:58857759..58859957

Molecular Weight (calculated)

21462.3 Da

IEP (calculated)

10.363

GRAVY (calculated)

-0.281

Length

190 amino acids

Sequence
(BLAST)

001: MKTILASETM DIPEGVTVTV AAKLVTVEGP RGKLTRNFKH LNLDFQLQEG GRKLKVDAWF GTRRTMAAIR TAISHVQNLI KGVTKGYRYK MRFVYAHFPI
101: NASITNSNTA IEIRNFLGEK KVRKVDMLDG VTILRSEKVK DELILDGNDV ELVSRSAALI NQKCHVKKKD IRKFLDGIYV SDKGVIEEEQ

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.