Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G006500.1 | Wheat | cytosol | 99.47 | 99.47 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 99.47 | 99.47 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 99.47 | 99.47 |
| OQU84143 | Sorghum | cytosol | 67.72 | 90.14 |
| EER89049 | Sorghum | cytosol | 88.89 | 88.42 |
| Os09t0485900-01 | Rice | cytosol | 88.89 | 88.42 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 88.36 | 87.89 |
| Zm00001d035902_P001 | Maize | cytosol | 88.36 | 87.89 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 46.03 | 87.0 |
| Zm00001d045577_P003 | Maize | cytosol | 87.3 | 86.84 |
| Zm00001d045578_P001 | Maize | plastid | 87.3 | 86.84 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 87.3 | 86.84 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 44.97 | 85.0 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 44.44 | 84.85 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 85.19 | 83.42 |
| PGSC0003DMT400064920 | Potato | cytosol | 83.6 | 81.44 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 83.07 | 80.93 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 82.54 | 80.83 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 82.01 | 79.9 |
| Solyc12g096700.1.1 | Tomato | nucleus | 82.01 | 79.9 |
| KRH64280 | Soybean | nucleus | 80.42 | 79.17 |
| PGSC0003DMT400069184 | Potato | cytosol | 77.25 | 78.92 |
| PGSC0003DMT400075242 | Potato | cytosol | 77.25 | 78.92 |
| CDY43615 | Canola | cytosol | 69.84 | 78.57 |
| KRH53656 | Soybean | cytosol | 79.37 | 78.12 |
| KRH53659 | Soybean | nucleus | 79.37 | 78.12 |
| KRH53658 | Soybean | cytosol | 79.37 | 78.12 |
| Bra037917.1-P | Field mustard | cytosol | 79.89 | 77.84 |
| Bra039999.1-P | Field mustard | cytosol | 79.89 | 77.84 |
| CDX87811 | Canola | cytosol, extracellular | 79.89 | 77.84 |
| CDX93796 | Canola | cytosol | 79.89 | 77.84 |
| AT1G33140.1 | Thale cress | cytosol | 79.89 | 77.84 |
| AT1G33120.1 | Thale cress | cytosol | 79.89 | 77.84 |
| CDX99541 | Canola | cytosol | 79.89 | 77.44 |
| CDX86863 | Canola | cytosol | 79.89 | 77.44 |
| CDY25258 | Canola | cytosol, plasma membrane | 79.37 | 77.32 |
| CDY14882 | Canola | cytosol | 79.37 | 77.32 |
| Bra033171.1-P | Field mustard | cytosol | 79.37 | 77.32 |
| Bra035980.1-P | Field mustard | cytosol | 79.37 | 77.32 |
| CDY32946 | Canola | cytosol, extracellular | 79.37 | 77.32 |
| CDX96888 | Canola | cytosol | 78.84 | 76.8 |
| CDX94253 | Canola | cytosol | 78.84 | 76.8 |
| AT4G10450.1 | Thale cress | cytosol | 77.78 | 75.77 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 67.72 | 68.45 |
| Solyc06g034380.1.1 | Tomato | cytosol | 40.74 | 58.33 |
| Solyc12g017290.1.1 | Tomato | cytosol | 39.68 | 58.14 |
| KRH30764 | Soybean | cytosol | 28.04 | 56.99 |
| Bra000049.1-P | Field mustard | cytosol | 17.99 | 56.67 |
| CDY07742 | Canola | cytosol | 17.99 | 56.67 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019843 | InterPro:IPR036789 | PFAM:PF00347 | PIRSF:PIRSF002162 | ScanProsite:PS00700 |
| PANTHER:PTHR11655 | PANTHER:PTHR11655:SF24 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf |
| SUPFAM:SSF56053 | EnsemblPlantsGene:TraesCS3B01G007200 | EnsemblPlants:TraesCS3B01G007200.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:3665457..3667325
Molecular Weight (calculated)
21266.1 Da
IEP (calculated)
10.480
GRAVY (calculated)
-0.242
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILASETM EIPEEVTVKV SAKMISVTGP RGTLTRNFKH LNLDFQLQEG GRKLKVDAWF GTRKTMAAIR TAISHVQNLI TGVTKGFRYK MRFVYAHFPI
101: NASITAANKG IEIRNFLGEK KVRKVDMLDG VTILRSEKVK DEIVLDGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGAIKEE
101: NASITAANKG IEIRNFLGEK KVRKVDMLDG VTILRSEKVK DEIVLDGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGAIKEE
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.