CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	KRH14106	AT5G35750.1	18642946
AT1G33120.1	KRH74010	AT5G35750.1	18642946
AT1G33140.1	KRH14106	AT5G35750.1	18642946
AT1G33140.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64280	Soybean	nucleus	82.35	80.21
KRH53656	Soybean	cytosol	79.14	77.08
KRH53658	Soybean	cytosol	79.14	77.08
KRH53659	Soybean	nucleus	79.14	77.08
VIT_16s0098g00730.t01	Wine grape	cytosol	76.47	74.09
VIT_09s0002g01620.t01	Wine grape	cytosol	75.4	73.06
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	75.4	72.68
PGSC0003DMT400064920	Potato	cytosol	74.87	72.16
Solyc12g096700.1.1	Tomato	nucleus	73.8	71.13
Solyc06g073310.2.1	Tomato	nucleus, plastid	73.8	71.13
CDY32946	Canola	cytosol, extracellular	73.8	71.13
HORVU7Hr1G043940.1	Barley	cytosol	34.22	70.33
CDX93796	Canola	cytosol	72.73	70.1
CDX87811	Canola	cytosol, extracellular	72.73	70.1
Bra039999.1-P	Field mustard	cytosol	72.73	70.1
PGSC0003DMT400075242	Potato	cytosol	68.98	69.73
HORVU2Hr1G058720.1	Barley	cytosol	33.69	69.23
PGSC0003DMT400069184	Potato	cytosol	68.45	69.19
AT1G33140.1	Thale cress	cytosol	71.66	69.07
AT1G33120.1	Thale cress	cytosol	71.66	69.07
CDX96888	Canola	cytosol	71.66	69.07
CDY14882	Canola	cytosol	71.66	69.07
Bra035980.1-P	Field mustard	cytosol	71.66	69.07
AT4G10450.1	Thale cress	cytosol	71.12	68.56
EER89049	Sorghum	cytosol	68.98	67.89
Os09t0485900-01	Rice	cytosol	68.98	67.89
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	68.45	67.72
Bra037917.1-P	Field mustard	cytosol	70.05	67.53
CDY25258	Canola	cytosol, plasma membrane	70.05	67.53
Bra033171.1-P	Field mustard	cytosol	70.05	67.53
Zm00001d035902_P001	Maize	cytosol	68.45	67.37
Zm00001d035901_P001	Maize	plasma membrane, plastid	68.45	67.37
TraesCS3A01G007300.1	Wheat	cytosol	67.91	67.2
TraesCS3D01G003800.1	Wheat	cytosol	67.91	67.2
TraesCS3B01G011900.1	Wheat	cytosol	67.91	67.2
TraesCS3B01G006500.1	Wheat	cytosol	67.91	67.2
TraesCS3B01G011300.1	Wheat	cytosol	67.91	67.2
TraesCS7A01G020200.1	Wheat	cytosol	67.91	67.2
CDX86863	Canola	cytosol	70.05	67.18
CDX99541	Canola	cytosol	70.05	67.18
CDX94253	Canola	cytosol	69.52	67.01
Zm00001d045577_P003	Maize	cytosol	67.91	66.84
Zm00001d045578_P001	Maize	plastid	67.91	66.84
TraesCS4A01G472200.1	Wheat	cytosol	67.38	66.67
TraesCS3D01G003200.1	Wheat	cytosol	67.38	66.67
HORVU7Hr1G002060.1	Barley	cytosol	67.38	66.67
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	66.84	65.79
CDY43615	Canola	cytosol	58.29	64.88
OQU84143	Sorghum	cytosol	49.2	64.79
Solyc12g017290.1.1	Tomato	cytosol	41.18	59.69
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	31.55	59.0
GSMUA_Achr2P00380_001	Banana	cytosol	31.02	58.59
GSMUA_Achr5P20390_001	Banana	cytosol	31.02	58.0
HORVU0Hr1G006020.2	Barley	cytosol, plastid	67.38	57.53
Solyc06g034380.1.1	Tomato	cytosol	39.57	56.06
HORVU0Hr1G006040.1	Barley	cytosol	15.51	54.72
HORVU3Hr1G001140.5	Barley	plastid	67.38	53.85
TraesCS7D01G016500.2	Wheat	nucleus	67.91	47.92
KRH30764	Soybean	cytosol	19.79	39.78

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	EMBL:ACUP02002750	EnsemblPlantsGene:GLYMA_04G226500	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	UniProt:I1JYF9	InterPro:IPR036789	EnsemblPlants:KRH64273	ProteinID:KRH64273	ProteinID:KRH64273.1
PFAM:PF00347	PIRSF:PIRSF002162	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI00023BF5ED	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49611192..49612359

Molecular Weight (calculated)

21375.2 Da

IEP (calculated)

10.712

GRAVY (calculated)

-0.344

Length

187 amino acids

Sequence
(BLAST)

001: MKTILSAETM NIPDGVSVKV NAKVIEVEGP RGKLVRDFKH LNLDFQLITD ENGKRKLKVE AWFGSRKTSA AIRTALSHVE NLITGVTKGY RYKMRFVYAH
101: FPINASIGND NKSIEIRNFL GEKKVRKVDL LNGVSVVRSE KVKDELILDG NDIELVSRNA MLKRRISGNF SMAFMLVRRE QYWKSRC

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.