Factsheet for HORVU3Hr1G001140.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G002060.1	Barley	cytosol	80.77	100.0
TraesCS3A01G007300.1	Wheat	cytosol	79.49	98.41
TraesCS3B01G006500.1	Wheat	cytosol	79.49	98.41
TraesCS7A01G020200.1	Wheat	cytosol	79.49	98.41
TraesCS3B01G011900.1	Wheat	cytosol	79.49	98.41
TraesCS3D01G003800.1	Wheat	cytosol	79.06	97.88
HORVU7Hr1G043940.1	Barley	cytosol	36.75	94.51
OQU84143	Sorghum	cytosol	55.13	90.85
HORVU2Hr1G058720.1	Barley	cytosol	35.04	90.11
HORVU0Hr1G006020.2	Barley	cytosol, plastid	83.33	89.04
EER89049	Sorghum	cytosol	72.22	88.95
Zm00001d035901_P001	Maize	plasma membrane, plastid	71.79	88.42
Zm00001d035902_P001	Maize	cytosol	71.79	88.42
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	71.79	88.42
Os09t0485900-01	Rice	cytosol	71.37	87.89
Zm00001d045577_P003	Maize	cytosol	70.94	87.37
Zm00001d045578_P001	Maize	plastid	70.94	87.37
VIT_09s0002g01620.t01	Wine grape	cytosol	68.38	82.9
PGSC0003DMT400064920	Potato	cytosol	67.09	80.93
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	66.67	80.41
VIT_16s0098g00730.t01	Wine grape	cytosol	66.24	80.31
Solyc06g073310.2.1	Tomato	nucleus, plastid	65.81	79.38
Solyc12g096700.1.1	Tomato	nucleus	65.81	79.38
HORVU0Hr1G006040.1	Barley	cytosol	17.95	79.25
PGSC0003DMT400069184	Potato	cytosol	61.97	78.38
PGSC0003DMT400075242	Potato	cytosol	61.97	78.38
KRH64280	Soybean	nucleus	64.1	78.12
CDY43615	Canola	cytosol	55.98	77.98
AT1G33140.1	Thale cress	cytosol	64.1	77.32
AT1G33120.1	Thale cress	cytosol	64.1	77.32
Bra037917.1-P	Field mustard	cytosol	64.1	77.32
Bra039999.1-P	Field mustard	cytosol	64.1	77.32
CDX87811	Canola	cytosol, extracellular	64.1	77.32
CDX93796	Canola	cytosol	64.1	77.32
KRH53659	Soybean	nucleus	63.25	77.08
KRH53656	Soybean	cytosol	63.25	77.08
KRH53658	Soybean	cytosol	63.25	77.08
CDX99541	Canola	cytosol	64.1	76.92
CDX86863	Canola	cytosol	64.1	76.92
CDY25258	Canola	cytosol, plasma membrane	63.68	76.8
CDY14882	Canola	cytosol	63.68	76.8
CDX96888	Canola	cytosol	63.68	76.8
CDY32946	Canola	cytosol, extracellular	63.68	76.8
Bra033171.1-P	Field mustard	cytosol	63.68	76.8
Bra035980.1-P	Field mustard	cytosol	63.68	76.8
CDX94253	Canola	cytosol	63.25	76.29
AT4G10450.1	Thale cress	cytosol	62.39	75.26
TraesCS7D01G016500.2	Wheat	nucleus	82.91	73.21
KRH64273	Soybean	endoplasmic reticulum, nucleus	53.85	67.38
Solyc06g034380.1.1	Tomato	cytosol	32.05	56.82
Solyc12g017290.1.1	Tomato	cytosol	31.2	56.59
KRH30764	Soybean	cytosol	22.22	55.91
Bra000049.1-P	Field mustard	cytosol	14.1	55.0
CDY07742	Canola	cytosol	14.1	55.0

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	UniProt:A0A287JW01	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	EnsemblPlantsGene:HORVU3Hr1G001140	EnsemblPlants:HORVU3Hr1G001140.5	InterPro:IPR036789
PFAM:PF00347	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2
InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI000B47F859	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:2524445..2526706

Molecular Weight (calculated)

26297.1 Da

IEP (calculated)

11.034

GRAVY (calculated)

-0.530

Length

234 amino acids

Sequence
(BLAST)

001: QLYNISFSPS APPPPPPAQH SRHRPPPSRK KKKKKRGATN PNPARMKTIL ASETMDIPEE VTVKVSAKMI SVTGPRGTLT RNFKHLNLDF QLQDGGRKLK
101: VDAWFGTRRT MAAIRTAISH VQNLITGVTK GFRYKMRFVY AHFPINASIT AANRGIEIRN FLGEKKVRKV DMLDGVTILR SEKVKDEIVL DGNDIELVSR
201: SAALINQKCH VKNKDIRKFL DGIYVSDKGA IKEE

Best Arabidopsis Sequence Match ( AT5G19540.2 )
(BLAST)

001: MAVSSFAVLP PFGSSYSSTT DRSSSSSFYS SSKLLRISQY RFQSNSRCPN VFVSCSLNQP SDDASDAALF LESNSIADYM RFKRRPDPGN GTSELQTAIV
101: SYKKRFPWIL LNPFLQVDLV STIHIADKEY FTTLQKELEP YDSILYEMVA SKETLENRRN PIASKRLKSS RSRGFSILGF IQRQMARVLT LDFQLDCLDY
201: DTENWYHADL DFETFQLLQK EKGESFFSFA RDMTIRSTKA MIQPALVTEG RDTWRSKLLW VSRVFPMPLV GLFLIGAFCA DFGDQTSDYP ELEALSRLDF
301: GAAMKVFLAK RLTSELTLET SDIEEKSVII GERNRAATEA LRRAIEQGHK RIGILYGGGH MPDLGRRLRE EFDLVPSEVR WVTAWSIRNP TDLETSSYPI
401: LRKMAEALRW PLNRYQTLAL LIFSSVLALD LCFWELFFGS TIDWATQIGA ELYQFIDNTK IV

Arabidopsis Description

Thermosome subunit gamma [Source:UniProtKB/TrEMBL;Acc:Q949W7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.