Factsheet for Solyc06g073310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT1G33140.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069184	Potato	cytosol	93.3	97.84
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	95.36	95.36
Solyc12g096700.1.1	Tomato	nucleus	94.33	94.33
VIT_09s0002g01620.t01	Wine grape	cytosol	89.18	89.64
VIT_16s0098g00730.t01	Wine grape	cytosol	89.18	89.64
AT1G33140.1	Thale cress	cytosol	87.11	87.11
AT1G33120.1	Thale cress	cytosol	87.11	87.11
KRH64280	Soybean	nucleus	86.08	86.98
CDY32946	Canola	cytosol, extracellular	86.6	86.6
CDX87811	Canola	cytosol, extracellular	86.08	86.08
CDX93796	Canola	cytosol	86.08	86.08
Bra035980.1-P	Field mustard	cytosol	86.08	86.08
Bra039999.1-P	Field mustard	cytosol	86.08	86.08
CDY14882	Canola	cytosol	86.08	86.08
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	44.33	86.0
GSMUA_Achr2P00380_001	Banana	cytosol	43.81	85.86
CDX96888	Canola	cytosol	85.57	85.57
KRH53659	Soybean	nucleus	84.54	85.42
KRH53658	Soybean	cytosol	84.54	85.42
KRH53656	Soybean	cytosol	84.54	85.42
GSMUA_Achr5P20390_001	Banana	cytosol	43.81	85.0
CDX99541	Canola	cytosol	85.05	84.62
CDX86863	Canola	cytosol	85.05	84.62
Bra037917.1-P	Field mustard	cytosol	84.54	84.54
Bra033171.1-P	Field mustard	cytosol	84.02	84.02
CDY25258	Canola	cytosol, plasma membrane	84.02	84.02
CDX94253	Canola	cytosol	84.02	84.02
CDY43615	Canola	cytosol	72.16	83.33
AT4G10450.1	Thale cress	cytosol	82.47	82.47
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	79.9	82.01
EER89049	Sorghum	cytosol	79.9	81.58
TraesCS3A01G007300.1	Wheat	cytosol	79.38	81.48
TraesCS3B01G011900.1	Wheat	cytosol	79.38	81.48
TraesCS3B01G006500.1	Wheat	cytosol	79.38	81.48
TraesCS3B01G011300.1	Wheat	cytosol	79.38	81.48
TraesCS7A01G020200.1	Wheat	cytosol	79.38	81.48
HORVU7Hr1G002060.1	Barley	cytosol	79.38	81.48
Zm00001d035901_P001	Maize	plasma membrane, plastid	79.38	81.05
Zm00001d035902_P001	Maize	cytosol	79.38	81.05
TraesCS4A01G472200.1	Wheat	cytosol	78.87	80.95
TraesCS3D01G003800.1	Wheat	cytosol	78.87	80.95
TraesCS3D01G003200.1	Wheat	cytosol	78.87	80.95
Os09t0485900-01	Rice	cytosol	78.87	80.53
OQU84143	Sorghum	cytosol	58.76	80.28
Zm00001d045577_P003	Maize	cytosol	78.35	80.0
Zm00001d045578_P001	Maize	plastid	78.35	80.0
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	77.32	78.95
KRH64273	Soybean	endoplasmic reticulum, nucleus	71.13	73.8
HORVU0Hr1G006040.1	Barley	cytosol	19.59	71.7
Solyc06g034380.1.1	Tomato	cytosol	47.94	70.45
HORVU0Hr1G006020.2	Barley	cytosol, plastid	79.38	70.32
HORVU7Hr1G043940.1	Barley	cytosol	31.96	68.13
Solyc12g017290.1.1	Tomato	cytosol	44.33	66.67
HORVU2Hr1G058720.1	Barley	cytosol	30.93	65.93
HORVU3Hr1G001140.5	Barley	plastid	79.38	65.81
CDY07742	Canola	cytosol	20.1	65.0
Bra000049.1-P	Field mustard	cytosol	20.1	65.0
KRH30764	Soybean	cytosol	29.9	62.37
TraesCS7D01G016500.2	Wheat	nucleus	79.38	58.11

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789
UniProt:K4C950	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF23
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	EnsemblPlantsGene:Solyc06g073310.2
EnsemblPlants:Solyc06g073310.2.1	UniParc:UPI0002765DBA	:	:	:	:

Description

No Description!

Coordinates

chr6:-:45162919..45164850

Molecular Weight (calculated)

21931.8 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.372

Length

194 amino acids

Sequence
(BLAST)

001: MKTILSSETM DIPDGITIKV KAKQIEVEGP RGKLVRNFKH LNLDFQLIKD EETGQKKLKV DAWFGSRKAT ASIRTALSHV NNLIVGVTKG YRYKMRFVYA
101: HFPINASITG GNKSIEIRNF LGEKKVRKVD MLDGVTVVRS EKVKDELVLD GNDIELVSRS AALINQKCHV KNKDIRKFLD GIYVSEKGKI VEEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.