Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07742 | Canola | cytosol | 100.0 | 100.0 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 55.0 | 36.26 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 53.33 | 35.16 |
| Bra037917.1-P | Field mustard | cytosol | 78.33 | 24.23 |
| Bra033171.1-P | Field mustard | cytosol | 78.33 | 24.23 |
| Bra039999.1-P | Field mustard | cytosol | 73.33 | 22.68 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 70.0 | 21.76 |
| Bra035980.1-P | Field mustard | cytosol | 70.0 | 21.65 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 70.0 | 21.65 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 68.33 | 21.24 |
| PGSC0003DMT400064920 | Potato | cytosol | 68.33 | 21.13 |
| Solyc12g096700.1.1 | Tomato | nucleus | 66.67 | 20.62 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 65.0 | 20.1 |
| Os09t0485900-01 | Rice | cytosol | 60.0 | 18.95 |
| Zm00001d035902_P001 | Maize | cytosol | 58.33 | 18.42 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 58.33 | 18.42 |
| EER89049 | Sorghum | cytosol | 58.33 | 18.42 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 56.67 | 17.99 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 56.67 | 17.99 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 56.67 | 17.99 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 56.67 | 17.89 |
| Zm00001d045578_P001 | Maize | plastid | 56.67 | 17.89 |
| Zm00001d045577_P003 | Maize | cytosol | 56.67 | 17.89 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 55.0 | 17.46 |
| PGSC0003DMT400075242 | Potato | cytosol | 53.33 | 17.3 |
| PGSC0003DMT400069184 | Potato | cytosol | 53.33 | 17.3 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 55.0 | 15.07 |
| HORVU3Hr1G001140.5 | Barley | plastid | 55.0 | 14.1 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 56.67 | 12.83 |
| Solyc12g017290.1.1 | Tomato | cytosol | 23.33 | 10.85 |
| Solyc06g034380.1.1 | Tomato | cytosol | 13.33 | 6.06 |
| OQU84143 | Sorghum | cytosol | 13.33 | 5.63 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 0.0 | 0.0 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.90.930.12 | MapMan:35.1 | EnsemblPlantsGene:Bra000049 | EnsemblPlants:Bra000049.1 | EnsemblPlants:Bra000049.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | InterPro:IPR036789 |
| UniProt:M4C771 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF23 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_a/b-dom_sf | UniParc:UPI0002540090 |
Description
AT4G10450 (E=2e-020) | 60S ribosomal protein L9 (RPL90D)
Coordinates
chrA03:-:9031909..9032091
Molecular Weight (calculated)
6915.5 Da
IEP (calculated)
6.790
GRAVY (calculated)
-0.232
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MKMILSSETM EIPDGVAKVI EVESPRSKLT HDCKHINFDF HLIKDTVIGK RELKIDSWFG
001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQVLSL LVVLF
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQVLSL LVVLF
Arabidopsis Description
RPL9D60S ribosomal protein L9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.