Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015729 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 99.48 | 99.48 |
| PGSC0003DMT400075242 | Potato | cytosol | 91.24 | 95.68 |
| PGSC0003DMT400069184 | Potato | cytosol | 89.18 | 93.51 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 91.75 | 92.23 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 91.24 | 91.71 |
| KRH64280 | Soybean | nucleus | 88.14 | 89.06 |
| KRH53659 | Soybean | nucleus | 86.6 | 87.5 |
| KRH53658 | Soybean | cytosol | 86.6 | 87.5 |
| KRH53656 | Soybean | cytosol | 86.6 | 87.5 |
| AT1G33140.1 | Thale cress | cytosol | 86.6 | 86.6 |
| CDY14882 | Canola | cytosol | 86.6 | 86.6 |
| CDX96888 | Canola | cytosol | 86.6 | 86.6 |
| AT1G33120.1 | Thale cress | cytosol | 86.6 | 86.6 |
| CDX93796 | Canola | cytosol | 86.6 | 86.6 |
| Bra039999.1-P | Field mustard | cytosol | 86.6 | 86.6 |
| CDX87811 | Canola | cytosol, extracellular | 86.6 | 86.6 |
| Bra035980.1-P | Field mustard | cytosol | 86.6 | 86.6 |
| CDY32946 | Canola | cytosol, extracellular | 86.08 | 86.08 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 43.81 | 85.86 |
| CDX99541 | Canola | cytosol | 86.08 | 85.64 |
| CDX86863 | Canola | cytosol | 86.08 | 85.64 |
| Bra037917.1-P | Field mustard | cytosol | 85.57 | 85.57 |
| Bra033171.1-P | Field mustard | cytosol | 85.05 | 85.05 |
| CDX94253 | Canola | cytosol | 85.05 | 85.05 |
| CDY25258 | Canola | cytosol, plasma membrane | 85.05 | 85.05 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 43.81 | 85.0 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 43.3 | 84.0 |
| CDY43615 | Canola | cytosol | 72.68 | 83.93 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 81.44 | 83.6 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 80.93 | 83.07 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 80.93 | 83.07 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 80.93 | 83.07 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 80.93 | 83.07 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 80.93 | 83.07 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 80.93 | 83.07 |
| AT4G10450.1 | Thale cress | cytosol | 82.99 | 82.99 |
| EER89049 | Sorghum | cytosol | 80.93 | 82.63 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 80.41 | 82.54 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 80.41 | 82.54 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 80.41 | 82.54 |
| Os09t0485900-01 | Rice | cytosol | 80.41 | 82.11 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 80.41 | 82.11 |
| Zm00001d035902_P001 | Maize | cytosol | 80.41 | 82.11 |
| Zm00001d045577_P003 | Maize | cytosol | 79.38 | 81.05 |
| Zm00001d045578_P001 | Maize | plastid | 79.38 | 81.05 |
| OQU84143 | Sorghum | cytosol | 59.28 | 80.99 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 78.35 | 80.0 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 72.16 | 74.87 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 34.02 | 72.53 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 19.59 | 71.7 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 80.93 | 71.69 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 32.99 | 70.33 |
| CDY07742 | Canola | cytosol | 21.13 | 68.33 |
| Bra000049.1-P | Field mustard | cytosol | 21.13 | 68.33 |
| HORVU3Hr1G001140.5 | Barley | plastid | 80.93 | 67.09 |
| KRH30764 | Soybean | cytosol | 29.9 | 62.37 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 80.93 | 59.25 |
Protein Annotations
| EntrezGene:102585829 | MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | ProteinID:ABA81856 | ProteinID:ABA81856.1 | ProteinID:ABB29957 |
| ProteinID:ABB29957.1 | EMBL:DQ207848 | EMBL:DQ235200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | InterPro:IPR036789 | UniProt:M1CD37 | PFAM:PF00347 |
| EnsemblPlantsGene:PGSC0003DMG400025212 | PGSC:PGSC0003DMG400025212 | EnsemblPlants:PGSC0003DMT400064920 | PIRSF:PIRSF002162 | ScanProsite:PS00700 | PANTHER:PTHR11655 |
| PANTHER:PTHR11655:SF23 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS2 | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 |
| UniParc:UPI0002965576 | RefSeq:XP_006351066.1 | : | : | : | : |
Description
60S ribosomal protein L9 [Source:PGSC_GENE;Acc:PGSC0003DMG400025212]
Coordinates
chr8:+:8005478..8007543
Molecular Weight (calculated)
22006.9 Da
IEP (calculated)
10.261
GRAVY (calculated)
-0.426
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILSSETM DIPEGITIKV KAKQIEVEGP RGKLTRNFKH LNLDFQLIKD EETGKKKLKI DAWFGSRKTT AAIRTALSHV ENLITGVTKG YRYKMRFVYA
101: HFPINASISG GNKSIEIRNF LGEKKVRKVD MLDGVTVVRS EKVKDELVLD GNDIELVSRS AALINQKCHV KNKDIRKFLD GIYVSEKGRI VEEE
101: HFPINASISG GNKSIEIRNF LGEKKVRKVD MLDGVTVVRS EKVKDELVLD GNDIELVSRS AALINQKCHV KNKDIRKFLD GIYVSEKGRI VEEE
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Arabidopsis Description
RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.