CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	CDX74635	AT5G35750.1	18642946
AT1G33120.1	CDY47297	AT5G35750.1	18642946
AT1G33140.1	CDX74635	AT5G35750.1	18642946
AT1G33140.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039999.1-P	Field mustard	cytosol	100.0	100.0
CDX93796	Canola	cytosol	100.0	100.0
CDY32946	Canola	cytosol, extracellular	97.94	97.94
CDX96888	Canola	cytosol	96.91	96.91
CDY14882	Canola	cytosol	96.91	96.91
AT1G33140.1	Thale cress	cytosol	95.88	95.88
AT1G33120.1	Thale cress	cytosol	95.88	95.88
CDY43615	Canola	cytosol	82.47	95.24
CDX86863	Canola	cytosol	90.21	89.74
CDX99541	Canola	cytosol	90.21	89.74
CDY25258	Canola	cytosol, plasma membrane	89.69	89.69
CDX94253	Canola	cytosol	89.18	89.18
KRH53659	Soybean	nucleus	87.11	88.02
KRH53658	Soybean	cytosol	87.11	88.02
KRH53656	Soybean	cytosol	87.11	88.02
KRH64280	Soybean	nucleus	86.08	86.98
PGSC0003DMT400064920	Potato	cytosol	86.6	86.6
Solyc06g073310.2.1	Tomato	nucleus, plastid	86.08	86.08
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	86.08	86.08
PGSC0003DMT400069184	Potato	cytosol	81.44	85.41
VIT_16s0098g00730.t01	Wine grape	cytosol	84.54	84.97
Solyc12g096700.1.1	Tomato	nucleus	84.54	84.54
VIT_09s0002g01620.t01	Wine grape	cytosol	84.02	84.46
PGSC0003DMT400075242	Potato	cytosol	80.41	84.32
GSMUA_Achr2P00380_001	Banana	cytosol	41.75	81.82
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	41.24	80.0
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	77.84	79.89
TraesCS3A01G007300.1	Wheat	cytosol	77.32	79.37
TraesCS7A01G020200.1	Wheat	cytosol	77.32	79.37
TraesCS3B01G006500.1	Wheat	cytosol	77.32	79.37
HORVU7Hr1G002060.1	Barley	cytosol	77.32	79.37
TraesCS3B01G011300.1	Wheat	cytosol	77.32	79.37
TraesCS3B01G011900.1	Wheat	cytosol	77.32	79.37
GSMUA_Achr5P20390_001	Banana	cytosol	40.72	79.0
TraesCS3D01G003200.1	Wheat	cytosol	76.8	78.84
TraesCS3D01G003800.1	Wheat	cytosol	76.8	78.84
TraesCS4A01G472200.1	Wheat	cytosol	76.8	78.84
OQU84143	Sorghum	cytosol	56.7	77.46
EER89049	Sorghum	cytosol	75.77	77.37
Zm00001d035901_P001	Maize	plasma membrane, plastid	75.26	76.84
Zm00001d035902_P001	Maize	cytosol	75.26	76.84
Os09t0485900-01	Rice	cytosol	74.74	76.32
Zm00001d045577_P003	Maize	cytosol	74.74	76.32
Zm00001d045578_P001	Maize	plastid	74.74	76.32
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	74.23	75.79
CDY07742	Canola	cytosol	22.68	73.33
KRH64273	Soybean	endoplasmic reticulum, nucleus	70.1	72.73
HORVU0Hr1G006040.1	Barley	cytosol	19.59	71.7
HORVU0Hr1G006020.2	Barley	cytosol, plastid	77.32	68.49
HORVU7Hr1G043940.1	Barley	cytosol	31.96	68.13
HORVU2Hr1G058720.1	Barley	cytosol	30.93	65.93
HORVU3Hr1G001140.5	Barley	plastid	77.32	64.1
Solyc06g034380.1.1	Tomato	cytosol	41.75	61.36
KRH30764	Soybean	cytosol	29.38	61.29
Solyc12g017290.1.1	Tomato	cytosol	39.18	58.91
TraesCS7D01G016500.2	Wheat	nucleus	77.32	56.6

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:A0A078DEX3	EnsemblPlants:CDX87811	ProteinID:CDX87811	ProteinID:CDX87811.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
EnsemblPlantsGene:GSBRNA2T00146950001	InterPro:IPR036789	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655
PANTHER:PTHR11655:SF23	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
UniParc:UPI000253EB32	:	:	:	:	:

Description

BnaC06g08730D

Coordinates

chrLK031852:-:165554..167054

Molecular Weight (calculated)

22036.9 Da

IEP (calculated)

10.154

GRAVY (calculated)

-0.340

Length

194 amino acids

Sequence
(BLAST)

001: MKTILSSETM DIPESVSIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD AETGKRKLKI DSWFGSRKSS ASIRTALSHV DNLITGVTRG FRYKMRFVYA
101: HFPINASIGG DSKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.