Factsheet for TraesCS7D01G016500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G011900.1	Wheat	cytosol	71.32	100.0
TraesCS3A01G007300.1	Wheat	cytosol	71.32	100.0
TraesCS3D01G003800.1	Wheat	cytosol	70.94	99.47
TraesCS3D01G003200.1	Wheat	cytosol	70.94	99.47
HORVU7Hr1G002060.1	Barley	cytosol	70.19	98.41
HORVU7Hr1G043940.1	Barley	cytosol	32.08	93.41
OQU84143	Sorghum	cytosol	48.3	90.14
HORVU2Hr1G058720.1	Barley	cytosol	30.57	89.01
EER89049	Sorghum	cytosol	63.4	88.42
Os09t0485900-01	Rice	cytosol	63.4	88.42
Zm00001d035901_P001	Maize	plasma membrane, plastid	63.02	87.89
Zm00001d035902_P001	Maize	cytosol	63.02	87.89
HORVU0Hr1G006020.2	Barley	cytosol, plastid	72.08	87.21
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	32.83	87.0
Zm00001d045577_P003	Maize	cytosol	62.26	86.84
Zm00001d045578_P001	Maize	plastid	62.26	86.84
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	62.26	86.84
GSMUA_Achr5P20390_001	Banana	cytosol	32.08	85.0
GSMUA_Achr2P00380_001	Banana	cytosol	31.7	84.85
HORVU3Hr1G001140.5	Barley	plastid	73.21	82.91
VIT_09s0002g01620.t01	Wine grape	cytosol	60.38	82.9
PGSC0003DMT400064920	Potato	cytosol	59.25	80.93
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	58.87	80.41
VIT_16s0098g00730.t01	Wine grape	cytosol	58.49	80.31
Solyc12g096700.1.1	Tomato	nucleus	58.11	79.38
Solyc06g073310.2.1	Tomato	nucleus, plastid	58.11	79.38
KRH64280	Soybean	nucleus	56.98	78.65
PGSC0003DMT400075242	Potato	cytosol	54.72	78.38
PGSC0003DMT400069184	Potato	cytosol	54.72	78.38
CDY43615	Canola	cytosol	49.43	77.98
KRH53659	Soybean	nucleus	56.23	77.6
KRH53658	Soybean	cytosol	56.23	77.6
KRH53656	Soybean	cytosol	56.23	77.6
AT1G33120.1	Thale cress	cytosol	56.6	77.32
AT1G33140.1	Thale cress	cytosol	56.6	77.32
Bra037917.1-P	Field mustard	cytosol	56.6	77.32
Bra039999.1-P	Field mustard	cytosol	56.6	77.32
CDX93796	Canola	cytosol	56.6	77.32
CDX87811	Canola	cytosol, extracellular	56.6	77.32
CDX99541	Canola	cytosol	56.6	76.92
CDX86863	Canola	cytosol	56.6	76.92
CDX96888	Canola	cytosol	56.23	76.8
Bra033171.1-P	Field mustard	cytosol	56.23	76.8
CDY32946	Canola	cytosol, extracellular	56.23	76.8
CDY25258	Canola	cytosol, plasma membrane	56.23	76.8
Bra035980.1-P	Field mustard	cytosol	56.23	76.8
CDY14882	Canola	cytosol	56.23	76.8
CDX94253	Canola	cytosol	55.85	76.29
AT4G10450.1	Thale cress	cytosol	55.09	75.26
KRH64273	Soybean	endoplasmic reticulum, nucleus	47.92	67.91
Solyc06g034380.1.1	Tomato	cytosol	28.68	57.58
Solyc12g017290.1.1	Tomato	cytosol	27.92	57.36
CDY07742	Canola	cytosol	12.83	56.67
Bra000049.1-P	Field mustard	cytosol	12.83	56.67
KRH30764	Soybean	cytosol	19.62	55.91

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	InterPro:IPR036789	PFAM:PF00347	ScanProsite:PS00700	PANTHER:PTHR11655
PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
EnsemblPlantsGene:TraesCS7D01G016500	EnsemblPlants:TraesCS7D01G016500.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:7300648..7302490

Molecular Weight (calculated)

29176.6 Da

IEP (calculated)

10.544

GRAVY (calculated)

-0.422

Length

265 amino acids

Sequence
(BLAST)

001: MGSKVSLREK AVMLPCGVEP REARSNNPTD SPAYKHATLS PHPSSLPKPS PLPSSSPPPP PPPPPLPSPQ PPSPAKMKTI LASETMEIPE EVTVKVSAKM
101: ISVTGPRGTL TRNFKHLNLD FQLQEGGRKL KVDAWFGTRK TMAAIRTAIS HVQNLITGVT KGFRYKMRFV YAHFPINASI TAANRGIEIR NFLGEKKVRK
201: VDMLDGVTIL RSEKVKDEIV LDGNDIELVS RSAALINQKC HVKNKDIRKF LDGIYVSDKG AIKEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.