Factsheet for Os09t0485900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 19685898
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	Os10t0362300-03	AT5G35750.1	18642946
AT1G33140.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89049	Sorghum	cytosol	93.16	93.16
Zm00001d035902_P001	Maize	cytosol	92.63	92.63
Zm00001d035901_P001	Maize	plasma membrane, plastid	92.63	92.63
Zm00001d045578_P001	Maize	plastid	91.58	91.58
Zm00001d045577_P003	Maize	cytosol	91.58	91.58
OQU84143	Sorghum	cytosol	68.42	91.55
GSMUA_Achr5P20390_001	Banana	cytosol	47.89	91.0
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	90.0	90.0
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	47.37	90.0
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	88.42	88.89
TraesCS3A01G007300.1	Wheat	cytosol	88.42	88.89
TraesCS3B01G006500.1	Wheat	cytosol	88.42	88.89
TraesCS3B01G011900.1	Wheat	cytosol	88.42	88.89
TraesCS7A01G020200.1	Wheat	cytosol	88.42	88.89
TraesCS3B01G011300.1	Wheat	cytosol	87.89	88.36
HORVU7Hr1G002060.1	Barley	cytosol	87.89	88.36
TraesCS4A01G472200.1	Wheat	cytosol	87.89	88.36
TraesCS3D01G003800.1	Wheat	cytosol	87.89	88.36
TraesCS3D01G003200.1	Wheat	cytosol	87.89	88.36
GSMUA_Achr2P00380_001	Banana	cytosol	45.79	87.88
HORVU7Hr1G043940.1	Barley	cytosol	39.47	82.42
VIT_09s0002g01620.t01	Wine grape	cytosol	83.16	81.87
VIT_16s0098g00730.t01	Wine grape	cytosol	82.63	81.35
PGSC0003DMT400064920	Potato	cytosol	82.11	80.41
KRH64280	Soybean	nucleus	81.05	80.21
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	81.58	79.9
KRH53659	Soybean	nucleus	80.53	79.69
KRH53658	Soybean	cytosol	80.53	79.69
KRH53656	Soybean	cytosol	80.53	79.69
HORVU2Hr1G058720.1	Barley	cytosol	37.89	79.12
Solyc12g096700.1.1	Tomato	nucleus	80.53	78.87
Solyc06g073310.2.1	Tomato	nucleus, plastid	80.53	78.87
PGSC0003DMT400069184	Potato	cytosol	76.32	78.38
PGSC0003DMT400075242	Potato	cytosol	75.79	77.84
HORVU0Hr1G006020.2	Barley	cytosol, plastid	87.89	76.26
Bra037917.1-P	Field mustard	cytosol	76.84	75.26
CDX99541	Canola	cytosol	76.84	74.87
CDX86863	Canola	cytosol	76.84	74.87
Bra039999.1-P	Field mustard	cytosol	76.32	74.74
Bra035980.1-P	Field mustard	cytosol	76.32	74.74
Bra033171.1-P	Field mustard	cytosol	76.32	74.74
CDX87811	Canola	cytosol, extracellular	76.32	74.74
AT1G33140.1	Thale cress	cytosol	76.32	74.74
CDX93796	Canola	cytosol	76.32	74.74
CDX96888	Canola	cytosol	76.32	74.74
CDY14882	Canola	cytosol	76.32	74.74
CDY25258	Canola	cytosol, plasma membrane	76.32	74.74
AT1G33120.1	Thale cress	cytosol	76.32	74.74
CDX94253	Canola	cytosol	75.79	74.23
CDY32946	Canola	cytosol, extracellular	75.79	74.23
CDY43615	Canola	cytosol	64.74	73.21
AT4G10450.1	Thale cress	cytosol	74.74	73.2
HORVU3Hr1G001140.5	Barley	plastid	87.89	71.37
KRH64273	Soybean	endoplasmic reticulum, nucleus	67.89	68.98
TraesCS7D01G016500.2	Wheat	nucleus	88.42	63.4
CDY07742	Canola	cytosol	18.95	60.0
Bra000049.1-P	Field mustard	cytosol	18.95	60.0
Solyc12g017290.1.1	Tomato	cytosol	39.47	58.14
Solyc06g034380.1.1	Tomato	cytosol	40.0	57.58
KRH30764	Soybean	cytosol	27.37	55.91

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	EntrezGene:4347422	EMBL:AC108756	EMBL:AY323481	ProteinID:BAF25434.1
ProteinID:BAT08699.1	EMBL:D38012	EMBL:D83527	ProteinID:EAZ45175.1	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	InterPro:IPR036789	EnsemblPlantsGene:Os09g0485900	EnsemblPlants:Os09t0485900-01	UniProt:P49210	PFAM:PF00347
PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2
InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI00001B484B	RefSeq:XP_015612091.1	SEG:seg

Description

RPL9Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA). (Os09t0485900-01)

Coordinates

chr9:-:18752464..18754195

Molecular Weight (calculated)

21350.1 Da

IEP (calculated)

10.238

GRAVY (calculated)

-0.217

Length

190 amino acids

Sequence
(BLAST)

001: MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG GRKLQVDAWF GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI
101: NASITNSNTA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLDGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGTITEDA

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.