Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g047770.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33120.1 | Solyc07g047770.2.1 | AT5G35750.1 | 18642946 |
| AT1G33140.1 | Solyc07g047770.2.1 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g034380.1.1 | Tomato | cytosol | 65.12 | 63.64 |
| PGSC0003DMT400075242 | Potato | cytosol | 68.22 | 47.57 |
| Solyc12g096700.1.1 | Tomato | nucleus | 68.99 | 45.88 |
| Solyc06g073310.2.1 | Tomato | nucleus, plastid | 66.67 | 44.33 |
| Solyc08g014550.2.1 | Tomato | cytosol, extracellular, nucleus | 65.89 | 43.81 |
| VIT_16s0098g00730.t01 | Wine grape | cytosol | 65.12 | 43.52 |
| KRH64280 | Soybean | nucleus | 62.79 | 42.19 |
| VIT_09s0002g01620.t01 | Wine grape | cytosol | 62.79 | 41.97 |
| KRH53656 | Soybean | cytosol | 62.02 | 41.67 |
| KRH53658 | Soybean | cytosol | 62.02 | 41.67 |
| KRH53659 | Soybean | nucleus | 62.02 | 41.67 |
| KRH64273 | Soybean | endoplasmic reticulum, nucleus | 59.69 | 41.18 |
| Bra037917.1-P | Field mustard | cytosol | 61.24 | 40.72 |
| CDX86863 | Canola | cytosol | 61.24 | 40.51 |
| CDX99541 | Canola | cytosol | 61.24 | 40.51 |
| CDX94253 | Canola | cytosol | 60.47 | 40.21 |
| Bra033171.1-P | Field mustard | cytosol | 60.47 | 40.21 |
| CDY25258 | Canola | cytosol, plasma membrane | 60.47 | 40.21 |
| EER89049 | Sorghum | cytosol | 58.91 | 40.0 |
| TraesCS3B01G007200.1 | Wheat | cytosol, nucleus | 58.14 | 39.68 |
| TraesCS3B01G011300.1 | Wheat | cytosol | 58.14 | 39.68 |
| Zm00001d035901_P001 | Maize | plasma membrane, plastid | 58.14 | 39.47 |
| Os09t0485900-01 | Rice | cytosol | 58.14 | 39.47 |
| Zm00001d035902_P001 | Maize | cytosol | 58.14 | 39.47 |
| Bra035980.1-P | Field mustard | cytosol | 58.91 | 39.18 |
| AT1G33120.1 | Thale cress | cytosol | 58.91 | 39.18 |
| AT1G33140.1 | Thale cress | cytosol | 58.91 | 39.18 |
| Bra039999.1-P | Field mustard | cytosol | 58.91 | 39.18 |
| CDY32946 | Canola | cytosol, extracellular | 58.91 | 39.18 |
| CDY14882 | Canola | cytosol | 58.91 | 39.18 |
| CDX93796 | Canola | cytosol | 58.91 | 39.18 |
| CDX87811 | Canola | cytosol, extracellular | 58.91 | 39.18 |
| TraesCS3B01G006500.1 | Wheat | cytosol | 57.36 | 39.15 |
| TraesCS3A01G007300.1 | Wheat | cytosol | 57.36 | 39.15 |
| TraesCS3B01G011900.1 | Wheat | cytosol | 57.36 | 39.15 |
| TraesCS3D01G003200.1 | Wheat | cytosol | 57.36 | 39.15 |
| TraesCS4A01G472200.1 | Wheat | cytosol | 57.36 | 39.15 |
| TraesCS7A01G020200.1 | Wheat | cytosol | 57.36 | 39.15 |
| Zm00001d054084_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 57.36 | 38.95 |
| Zm00001d045577_P003 | Maize | cytosol | 57.36 | 38.95 |
| Zm00001d045578_P001 | Maize | plastid | 57.36 | 38.95 |
| CDX96888 | Canola | cytosol | 58.14 | 38.66 |
| HORVU7Hr1G002060.1 | Barley | cytosol | 56.59 | 38.62 |
| TraesCS3D01G003800.1 | Wheat | cytosol | 56.59 | 38.62 |
| GSMUA_Achr2P00380_001 | Banana | cytosol | 29.46 | 38.38 |
| AT4G10450.1 | Thale cress | cytosol | 57.36 | 38.14 |
| OQU84143 | Sorghum | cytosol | 41.86 | 38.03 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane | 29.46 | 38.0 |
| HORVU0Hr1G006040.1 | Barley | cytosol | 15.5 | 37.74 |
| GSMUA_Achr5P20390_001 | Banana | cytosol | 28.68 | 37.0 |
| CDY43615 | Canola | cytosol | 47.29 | 36.31 |
| HORVU7Hr1G043940.1 | Barley | cytosol | 25.58 | 36.26 |
| HORVU2Hr1G058720.1 | Barley | cytosol | 24.03 | 34.07 |
| HORVU0Hr1G006020.2 | Barley | cytosol, plastid | 56.59 | 33.33 |
| HORVU3Hr1G001140.5 | Barley | plastid | 56.59 | 31.2 |
| TraesCS7D01G016500.2 | Wheat | nucleus | 57.36 | 27.92 |
| KRH30764 | Soybean | cytosol | 18.6 | 25.81 |
| CDY07742 | Canola | cytosol | 10.85 | 23.33 |
| Bra000049.1-P | Field mustard | cytosol | 10.85 | 23.33 |
Protein Annotations
| MapMan:17.1.2.1.8 | Gene3D:3.90.930.12 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 | InterPro:IPR036789 |
| UniProt:K4DD63 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF24 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_a/b-dom_sf | SUPFAM:SSF56053 |
| EnsemblPlantsGene:Solyc12g017290.1 | EnsemblPlants:Solyc12g017290.1.1 | UniParc:UPI000276AB19 | : | : | : |
Description
No Description!
Coordinates
chr12:-:6498039..6498487
Molecular Weight (calculated)
14773.1 Da
IEP (calculated)
9.198
GRAVY (calculated)
-0.239
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPNRITTK VKAKLIEIEG PRGKLNHLNL DFHSRKATAA IRTTFSHVKN LIIGVTKGYW YKMCLVYAHF PINSSVTDRN KSIEICEFLG DMLDGVTVVP
101: SKKVKDELVL YRDDIELGWY LCNREGKNC
101: SKKVKDELVL YRDDIELGWY LCNREGKNC
001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQVLSL LVVLF
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQVLSL LVVLF
Arabidopsis Description
RPL9D60S ribosomal protein L9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.