Factsheet for VIT_09s0002g01620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946
AT1G33140.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0098g00730.t01	Wine grape	cytosol	94.82	94.82
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	92.23	91.75
PGSC0003DMT400064920	Potato	cytosol	91.71	91.24
Solyc12g096700.1.1	Tomato	nucleus	91.71	91.24
PGSC0003DMT400075242	Potato	cytosol	86.53	90.27
KRH64280	Soybean	nucleus	89.64	90.1
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	46.63	90.0
Solyc06g073310.2.1	Tomato	nucleus, plastid	89.64	89.18
KRH53656	Soybean	cytosol	88.08	88.54
KRH53658	Soybean	cytosol	88.08	88.54
KRH53659	Soybean	nucleus	88.08	88.54
PGSC0003DMT400069184	Potato	cytosol	84.46	88.11
GSMUA_Achr5P20390_001	Banana	cytosol	45.6	88.0
GSMUA_Achr2P00380_001	Banana	cytosol	45.08	87.88
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	83.42	85.19
TraesCS3B01G006500.1	Wheat	cytosol	82.9	84.66
TraesCS7A01G020200.1	Wheat	cytosol	82.9	84.66
HORVU7Hr1G002060.1	Barley	cytosol	82.9	84.66
TraesCS3D01G003800.1	Wheat	cytosol	82.9	84.66
TraesCS3B01G011900.1	Wheat	cytosol	82.9	84.66
TraesCS3B01G011300.1	Wheat	cytosol	82.9	84.66
TraesCS3A01G007300.1	Wheat	cytosol	82.9	84.66
CDY32946	Canola	cytosol, extracellular	84.97	84.54
TraesCS3D01G003200.1	Wheat	cytosol	82.38	84.13
TraesCS4A01G472200.1	Wheat	cytosol	82.38	84.13
Bra039999.1-P	Field mustard	cytosol	84.46	84.02
CDX87811	Canola	cytosol, extracellular	84.46	84.02
CDX93796	Canola	cytosol	84.46	84.02
OQU84143	Sorghum	cytosol	61.66	83.8
AT1G33140.1	Thale cress	cytosol	83.94	83.51
AT1G33120.1	Thale cress	cytosol	83.94	83.51
Os09t0485900-01	Rice	cytosol	81.87	83.16
EER89049	Sorghum	cytosol	81.87	83.16
CDY43615	Canola	cytosol	72.02	82.74
Zm00001d035902_P001	Maize	cytosol	81.35	82.63
Zm00001d035901_P001	Maize	plasma membrane, plastid	81.35	82.63
CDX86863	Canola	cytosol	83.42	82.56
CDX99541	Canola	cytosol	83.42	82.56
AT4G10450.1	Thale cress	cytosol	82.9	82.47
Bra033171.1-P	Field mustard	cytosol	82.9	82.47
CDY25258	Canola	cytosol, plasma membrane	82.9	82.47
CDY14882	Canola	cytosol	82.9	82.47
Bra035980.1-P	Field mustard	cytosol	82.9	82.47
Bra037917.1-P	Field mustard	cytosol	82.9	82.47
CDX96888	Canola	cytosol	82.9	82.47
Zm00001d045577_P003	Maize	cytosol	80.83	82.11
Zm00001d045578_P001	Maize	plastid	80.83	82.11
CDX94253	Canola	cytosol	82.38	81.96
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	79.27	80.53
KRH64273	Soybean	endoplasmic reticulum, nucleus	73.06	75.4
HORVU0Hr1G006040.1	Barley	cytosol	20.21	73.58
HORVU0Hr1G006020.2	Barley	cytosol, plastid	82.9	73.06
HORVU7Hr1G043940.1	Barley	cytosol	34.2	72.53
HORVU2Hr1G058720.1	Barley	cytosol	33.16	70.33
CDY07742	Canola	cytosol	21.76	70.0
Bra000049.1-P	Field mustard	cytosol	21.76	70.0
HORVU3Hr1G001140.5	Barley	plastid	82.9	68.38
Solyc06g034380.1.1	Tomato	cytosol	45.08	65.91
Solyc12g017290.1.1	Tomato	cytosol	41.97	62.79
KRH30764	Soybean	cytosol	30.05	62.37
TraesCS7D01G016500.2	Wheat	nucleus	82.9	60.38

Protein Annotations

EntrezGene:100253227	wikigene:100253227	MapMan:17.1.2.1.8	Gene3D:3.90.930.12	ProteinID:CCB59310	ProteinID:CCB59310.1
UniProt:F6HXY7	EMBL:FN596494	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789
EntrezGene:LOC100253227	wikigene:LOC100253227	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655
PANTHER:PTHR11655:SF24	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
TIGR:TC51859	UniParc:UPI00015C876B	ArrayExpress:VIT_09s0002g01620	EnsemblPlantsGene:VIT_09s0002g01620	EnsemblPlants:VIT_09s0002g01620.t01	unigene:Vvi.7563
RefSeq:XP_002276785	RefSeq:XP_002276785.1	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1464183..1466272

Molecular Weight (calculated)

21909.8 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.428

Length

193 amino acids

Sequence
(BLAST)

001: MKTILSSETM DIPDDVKIKV KAKMIEVEGP RGKLSRNFKH LNLDFQLIKD ESGKRKLKID AWFGSRKTTA AIRTALSHVE NLITGVTKGY RYKMRFVYAH
101: FPINASITNG NKGIEIRNFL GEKKVRKVDM LDGVSILRSE KVKDELVLDG NDIELVSRSA ALINQKCHVK NKDIRKFLDG IYVSEKGTIA EEE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.